Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0058 ATGGATTTTGTGGCGAATCCTTTTCCTGTGCCCTCTTCCTTGCTGGGCTCCTTTGGGAGCTTCGCTGAGAGGGTTAGACACATGAGCAGCCTCGCAGTTTCTGTTATTATTGGAAACATCTTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACATTATTGGGTGCCATGACGGGAGCTTTGATAGGCCAAGAGACTGAGAGCGGCTTTATTAGAGGAGCAGCAGTTGGTGCCATATCTGGAGCGGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGCCTCTTATATCTGATTGATGTCATTGCTAGCCTACTGAGTGGGAGACTTGTGCGAGAGAGGATTGGCCCTGCCATGTTAAGTGCCGTCCAAAGTCAGATGGGTGCTGTTGAAACAAACTTCGAGGAAGTTCAAAATATCTTTGACACTGGTGGTTGCAAGGGTTTAACAGGAGATTATGTTGAAAAGATCCCAAAGATCACAATCACAAATGATAATAATATCGATGCTTGGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGGCTGGAGAGACAGTCAGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATAGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTAGTGTCCCTGCTCCAAGTTTGGTTTCTTTATTCAAAATTAGGCATTGTGAAACGATTCGTCCATTCCAATCGGAAGAACGGGAAGTGTGAGAGACAAAATTCAGGAAAAACGGAATCCAAAGAGTCAGGAAGTGTTCATGAAGTTCAGACAACGGGTCTCAATGATTTTGAATTCCCAGTCAAATCCATTAAAAAGAAACAGCCACTAATTTCATACAAATGTTCTGATTTCACCCGAGTAGGTTTTATTCTTGATTTTTTAATGGACACTTGCTTTTTGCCTAAAGTTGTTTATGTTCATGCGATTATCTTCGCATGCGTGATGGGGACCTTTGGCAGTTTTGGCTTATATGCCTCCAAAGATAAGACCAAAAAGGGTACTCTGCTTAAATGCAAGAGGGGTTTGAAAGGTGCAAAAGATGGAAAGAGTTTGAAATATGATAAGACATCGTTGAGGCGTTTTGATTTGGAGGAGCTAGAGAAGGCTTCAAATAATTTTAGCCCAGATTGCATGCTGGGTTCTGGTGCATTTGGAATGGTGTATAAAGGAACCTTTGAATTAGAAGGAACCTTAGCCATTAAAAGAGCTCATGGTGAACCATTCTTAAGCAGGGAAGAGTTCAGAAATGCAGAAGTGAGCCTCATTCCGAAAGTAAATCACAGGAATCTTGTTAATTTGGTGGGATATTGTGAAGAACCTGGTGATGGGGTCCAAATACTGGTTTATGAGTATGTGCCTAATGGTTCTCTGCTCGTGTGCATGATGGGAAAAAGAGGGAAGAGCTTTACTTGGAGGCAAAGAGTAACCATAGCAATAGGAGCAGCTAAAGGGGAAAGGTTAGAGGCTGAAGTTTCAGATTTTGGGTTGATAAAATCAGGACCAACTGGGGATCAATCTCATGTTAGCAGCCAAATCAAAATAACCCCAGGATACCTTGATCCCACTTATTGTTCAACCTTTCATTTGACCACTTTCAGTGACGTTTATATTTTCGGTGTCATACTTCTCCAACTTATTTCTACTGGACCAGCGGTTGATCCCACAAAAAATCAAAATATTTCTCATATTTGTGATCAGTTAAGTCGTGCAAGGCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATTATAGATGCCAATTTACTATGTGAGCCTTGCAATATGAAGGTTATGTTGAAGATGGGTCAGCTTACCCTCCGATGTGGGGCTCGAGTGCCAAAGCATCGTCCTACAATGACTCAAGTGTGCCAAGAGCTACAAGAAGCTCTTCATGCAGCTGATAACTTGATTGGCAAACTACCTTCGAAAAAATTAAAAAAATCAAGTGGCACATCTCAAGAATTAACGGAACCAGAGATTCTCAAATCTATAGAAAACTATGCCCGTTCACAGAGTTTTGTAAGCATAGATGGTGTTGGATTCCAGAAGTTTCATATTGATATGGATAGTTTATCCTTTCAAAGTACAAACTTAAGATGCCTAGAAACTAATAGTATTAGTATTGATACTGATGTCAACACTTTGAGGAGAATTCAAGAAGATATATAA 2250 0.4124 MDFVANPFPVPSSLLGSFGSFAERVRHMSSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFEEVQNIFDTGGCKGLTGDYVEKIPKITITNDNNIDAWGERVSCSVCLQDFQAGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDLVSLLQVWFLYSKLGIVKRFVHSNRKNGKCERQNSGKTESKESGSVHEVQTTGLNDFEFPVKSIKKKQPLISYKCSDFTRVGFILDFLMDTCFLPKVVYVHAIIFACVMGTFGSFGLYASKDKTKKGTLLKCKRGLKGAKDGKSLKYDKTSLRRFDLEELEKASNNFSPDCMLGSGAFGMVYKGTFELEGTLAIKRAHGEPFLSREEFRNAEVSLIPKVNHRNLVNLVGYCEEPGDGVQILVYEYVPNGSLLVCMMGKRGKSFTWRQRVTIAIGAAKGERLEAEVSDFGLIKSGPTGDQSHVSSQIKITPGYLDPTYCSTFHLTTFSDVYIFGVILLQLISTGPAVDPTKNQNISHICDQLSRARPSLEKGNVEEIIDANLLCEPCNMKVMLKMGQLTLRCGARVPKHRPTMTQVCQELQEALHAADNLIGKLPSKKLKKSSGTSQELTEPEILKSIENYARSQSFVSIDGVGFQKFHIDMDSLSFQSTNLRCLETNSISIDTDVNTLRRIQEDI 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0058 749 MobiDBLite consensus disorder prediction 261 282 - -
Lele50g0058 749 SMART ring_2 190 231 IPR001841 -
Lele50g0058 749 CDD RING-H2_PA-TM-RING 190 232 - -
Lele50g0058 749 SUPERFAMILY Protein kinase-like (PK-like) 386 670 IPR011009 -
Lele50g0058 749 Gene3D Transferase(Phosphotransferase) domain 1 480 671 - -
Lele50g0058 749 MobiDBLite consensus disorder prediction 261 278 - -
Lele50g0058 749 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lele50g0058 749 ProSiteProfiles Protein kinase domain profile. 401 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0058 749 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Lele50g0058 749 Pfam Ring finger domain 189 232 IPR001841 -
Lele50g0058 749 FunFam Putative LRR receptor-like serine/threonine-protein kinase 373 479 - -
Lele50g0058 749 SUPERFAMILY RING/U-box 184 238 - -
Lele50g0058 749 Pfam Protein tyrosine and serine/threonine kinase 517 653 IPR001245 GO:0004672|GO:0006468
Lele50g0058 749 Pfam Protein tyrosine and serine/threonine kinase 406 512 IPR001245 GO:0004672|GO:0006468
Lele50g0058 749 FunFam NEP1-interacting protein-like 1 150 235 - -
Lele50g0058 749 Gene3D Phosphorylase Kinase; domain 1 373 479 - -
Lele50g0058 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 237 IPR013083 -
Lele50g0058 749 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0058 Lele-ChrLele50 404352 410937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0058 20 235 C3H Transcription Factor Family AT5G66070 76.852 8.85e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lele50g0058 PK_Tyr_Ser-Thr 2.1e-07 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0058 50 404352 410937 Lele51g0056 51 341663 343175 hybridization
Lele50g0058 50 404352 410937 Lele52g0058 52 382878 384414 hybridization