Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0056 ATGGTATTAGAGCATTTTGTCTATTCTCTTATTTCTCCTGCCTTGACTAGCCCCTCTGCTTCCTCAAATCCTCACTCAATCATGTTTCATCTTCTCCACATTCAGCTGTATGAAGGGAAAGTCTTCCCTGACTTAGTCTTTTATTTTCCTAGCTTTCATTCAGATCTTGCCCTGCAATTCCAGCTTCTCACTCCTCTTGTTGCTTTGTTCTTCTGTCTCTTCAGATCGGATTCTGAATTCGATCCTTCCAGCTTCGCAATGGCAAAGCCCAAGCACTCTCGCCTACCTCCTCGCAAATCCTCTTCTTCAACTCTCATTCTCTTCTTTACTTTTTTGTTCGCCTTCCTCCTCATCCTTCTTGTATCCTTTGGGATCCTTTCCCTTCCCAGTAGCTCCCGTCGTGATGCACACGTGGCCAACGATCTTAACTCCATTGTTCGGAGCACGCTTGATAAAGAGGGTGAAGAGAGGAGTGAGCAGTGGGTTGAACTAATATCTTGGGAGCCTAGAGCTTTTGTTTATCACAATTTTTTGACAAAGGAGGAATGTGAATACCTAATTAATCTGGCCAAGCCTCATATGCAGAAGTCAACAGTTGTTGATAGCGGGACTGGAAAGAGTAAAGATAGCAGAGTACGTACAAGTTCTGGAACTTTTCTACCCAGAGGACGTGATAAGATTGTGAGGAATATCGAGAAAAGGATTGCTGATTTTACTTTTATCCCTGTAGATCATGGCGAAGGACTTCAAGTTCTCCACTATGAAGTTGGACAAAAGTATGAGCCTCACTATGACTACTTTCTTGATGAGTATAACACTAAGAATGGCGGTCAGCGGATAGCTACAGTACTTATGTATCTCACAGATGTTGAAGAAGGGGGTGAGACGGTGTTCCCAGCTGCCGAGGGCAACTTCAGCTCTGTGCCATGGTGGAATGATCTCTCTGAATGTGGAAAAAAAGGACTTTCAATTAAGCCAAAGATGGGTGACGCTCTACTTTTCTGGAGCATGAAGCCTGATGCAACTTTAGATCCCTCTAGTTTGCATGGTGGTTGTCCAGTGATTAAGGGTAATAAATGGTCAAGTACCAAGTGGATTCGCGTCAATGAATACAAAATTTGA 1122 0.4349 MVLEHFVYSLISPALTSPSASSNPHSIMFHLLHIQLYEGKVFPDLVFYFPSFHSDLALQFQLLTPLVALFFCLFRSDSEFDPSSFAMAKPKHSRLPPRKSSSSTLILFFTFLFAFLLILLVSFGILSLPSSSRRDAHVANDLNSIVRSTLDKEGEERSEQWVELISWEPRAFVYHNFLTKEECEYLINLAKPHMQKSTVVDSGTGKSKDSRVRTSSGTFLPRGRDKIVRNIEKRIADFTFIPVDHGEGLQVLHYEVGQKYEPHYDYFLDEYNTKNGGQRIATVLMYLTDVEEGGETVFPAAEGNFSSVPWWNDLSECGKKGLSIKPKMGDALLFWSMKPDATLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0056 373 Pfam 2OG-Fe(II) oxygenase superfamily 249 367 IPR044862 -
Lele50g0056 373 SMART p4hc 169 367 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lele50g0056 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 245 368 IPR005123 -
Lele50g0056 373 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 137 367 IPR045054 -
Lele50g0056 373 Gene3D q2cbj1_9rhob like domain 162 368 - -
Lele50g0056 373 FunFam Prolyl 4-hydroxylase 4 161 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0056 Lele-ChrLele50 384720 388129 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0211 55 1322323 1324723 Lele50g0056 50 384720 388129 CCT
Lele50g0056 50 384720 388129 Lele51g0054 51 315600 322332 hybridization
Lele50g0056 50 384720 388129 Lele52g0055 52 356008 363558 hybridization