Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0051 ATGTGTTTATTTGTGGGAACTCTGATTGGCCTAGTGGCATGTAAATTTTTAAGACTTGTAACTGCCGATCGTTACCAGAGGCAGCTACAGTATCGTGTTCATATCCTACGAAGGAAAAAGTTAAATCCAGGATTTTCCCCCAATAATCTCCCTTGTATGAAGGCTCTGAATTTATCATTTGTACTGGTCTGTTTTGCAGAATGCTCTAGGGTTTCTCGATCTTCCTTGTCGGAGATGGCGGATTCTCCTCTCACAAGGACTTCAAGGTCCCCGTCCCCATGGAGAGCCCAGTCTATATCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGATCAAGATCCTGGTCAAGACACAGGCCAAGGTCCCGTTCAAGAAGCCGGGGCAGCCTGACACTTTTACTTCTGTGCCTTCTCTCATCGTTCTCATTTAGATCGAGGTCAAGAAGTCATGGAAGGCCTGACGCTGAAAATCATGGGAGTACTCTCTATGTTACTGGTCTATCATCAAGGGTTACTGAGAGGAACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTGGTGGTGGAGCCTCGTACACGTATTTCCCGCGGTTTTGCTTTTGTTACAATGGATAGTGTTGAGGATGCAAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCGAGAACTCCTACACCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGGTACCGTGGTGGATCAGGTCGGGATGACTATGCTTATCGTAGGTCACCGAGGCGCTCACCATACCGAGGTGGTCGGGATTCATCATTGCGGCACTCACCCTACGGTGGAAGATCTCGGAGGGATAGATCAAGGTCTCCCCCATATTCTCCTTATGGCAGTCCAGACAGGAAGTATGCTCGGGGCTCTAGTGGTGTGAGGCGTTACAGGAATCCGCGAAAGATTAACATACTTTGGCAACCTGGCTTGATGGAGTTTGATTCTGATAGACACAGCAAAGGAAATGAAAATTCAGGATCGTTTGCCTTTCCAAAGAGACAAGATGGACAATGTTATGGATCAAAAGCAACCCTGTCCCAAAAGCCTTATATCTGCTTTATAATGCTTGCTTCCCGATTCTGCGTTCGTACGGTCCCTGGAATTGACTCTCTCACCAATCAGATTAACACCAGTCGTTCATTTCCGCACTCACTTGCAATGGAATCCACGTCTCTTCACTTTCCCGTGTTTAAATTGGGAGTCGGAAGAATGAAGCGCTCACGGTGTCCCAAATCGACTCTCATTTCCTGTAATTCCTCCCGTGGAACCTCTGGTGGCAGATCCAGCAATGGCGATCATCACGATAATGAATATCTTGAAGCTTCCCTCCTCCTCTCAGAAACATTATCACACTATCAGATGTTGGGGCATGGATTTCGAGAAGAGTTACATTGGAATTCCTCTATACGTTCTGTTCCCATATCTCTCCAAGCAAACAACCCAAGGACAGATGCTGATATAATAAGACAGGCCTTTTTTCAGCGGTTCCAGAATCCAACAATCTTTCTCAAGATTTCTTGTGATGGAGACTATGTTCTGCCAATTGTTGTAGGAAAGTTTGCTATTGAAAAACTCTTGGATGCTGAAGTGGAACGTGAAAATGGGGATTGCCCAGATCAGTATCAGTTCGTGAAAAATCTTGCTGAAAGACTGGACCATGAAGTTATAATGGTGCGAATTACAAAGAGAGTGGTCAGTACTTACTTTGCTAGATTGTACCTTAGCAAGCCTGGGAGAAATGACATTGTAAGTGTGGATGCACGCCCCTCAGATGCCATTAATGTTGCAAATAGATGCAAGGCTCCAATATATGTAAGCAAACAAATTGTTTTAAATGATGCTATTAGACTTGGTTATGGAATGGGAAGAGAGCGTAATACAAAGTCTACCTACGATGTATTGCTTGACAGTCCTGCAGATGGCCCAGATTTGCTTTCCCAAGAACTAAGTATGATGCAAAATATGAATGTAGCTGCAAAACTGGAAAGATTTAAAGACGCAGTTGGTTCTCTTGTGATTGTTGAATTACCTAAAGGTATGTACCAAGAGAGACTTGAGGAATGA 2196 0.4472 MCLFVGTLIGLVACKFLRLVTADRYQRQLQYRVHILRRKKLNPGFSPNNLPCMKALNLSFVLVCFAECSRVSRSSLSEMADSPLTRTSRSPSPWRAQSISRSRSKTPPRARSRSRSRSRSWSRHRPRSRSRSRGSLTLLLLCLLSSFSFRSRSRSHGRPDAENHGSTLYVTGLSSRVTERNLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYAYRRSPRRSPYRGGRDSSLRHSPYGGRSRRDRSRSPPYSPYGSPDRKYARGSSGVRRYRNPRKINILWQPGLMEFDSDRHSKGNENSGSFAFPKRQDGQCYGSKATLSQKPYICFIMLASRFCVRTVPGIDSLTNQINTSRSFPHSLAMESTSLHFPVFKLGVGRMKRSRCPKSTLISCNSSRGTSGGRSSNGDHHDNEYLEASLLLSETLSHYQMLGHGFREELHWNSSIRSVPISLQANNPRTDADIIRQAFFQRFQNPTIFLKISCDGDYVLPIVVGKFAIEKLLDAEVERENGDCPDQYQFVKNLAERLDHEVIMVRITKRVVSTYFARLYLSKPGRNDIVSVDARPSDAINVANRCKAPIYVSKQIVLNDAIRLGYGMGRERNTKSTYDVLLDSPADGPDLLSQELSMMQNMNVAAKLERFKDAVGSLVIVELPKGMYQERLEE 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0051 731 MobiDBLite consensus disorder prediction 79 129 - -
Lele50g0051 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 237 IPR000504 GO:0003723
Lele50g0051 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 244 IPR000504 GO:0003723
Lele50g0051 731 SMART rrm1_1 167 240 IPR000504 GO:0003723
Lele50g0051 731 Gene3D - 88 250 IPR012677 -
Lele50g0051 731 Gene3D Bifunctional nuclease domain 521 663 IPR036104 GO:0004518
Lele50g0051 731 SUPERFAMILY Hypothetical protein TM0160 533 663 IPR036104 GO:0004518
Lele50g0051 731 MobiDBLite consensus disorder prediction 106 129 - -
Lele50g0051 731 Pfam Bifunctional nuclease domain 553 659 IPR003729 GO:0004518
Lele50g0051 731 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 526 661 IPR003729 GO:0004518
Lele50g0051 731 PANTHER VON HIPPEL-LINDAU PROTEIN 433 711 - -
Lele50g0051 731 MobiDBLite consensus disorder prediction 79 105 - -
Lele50g0051 731 MobiDBLite consensus disorder prediction 263 297 - -
Lele50g0051 731 MobiDBLite consensus disorder prediction 241 338 - -
Lele50g0051 731 CDD RRM_RBMX_like 165 244 - -
Lele50g0051 731 SUPERFAMILY RNA-binding domain, RBD 160 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0051 Lele-ChrLele50 354192 365591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0051 162 248 Eukaryotic Initiation Factors Gene Family AT1G49760 34.483 8.37e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0051 50 354192 365591 Lele51g0046 51 293298 297032 hybridization
Lele50g0051 50 354192 365591 Lele52g0050 52 328893 332554 hybridization