Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0035 ATGTCAATCGCAACTTCTCCTCACACTAATTTTCTCCAAAAGCCTATTCGCCCCCCCAATAACCCCACCACGCAAAACAACGTTTTTCCTGTTACCTCCATACGCACCATCAAGACTACCCCACTCAGACATGTTTCGATCAAATGCGCAGCCCCAACTGCCACCCAAACCCAGGATCGTTTCCCGGGTCAGACACAATCCCAAGATCGGGTCTTCAACTTCGCAGCTGGGCCGGCGACGCTGCCGGAGAACGTACTCCTGAGAGCTCAGTCGGAGCTCTACAACTGGCGCGGATGCGGCATGAGCGTGATGGAGATGAGCCACAGGGGTAAGGAGTTTCTGTCCATAATCCAGAAGGCCGAAGCAGATCTACGTGCCCTCTTGGAGATCTCACCGGAATATGCTGTTATGTTCTTGCAAGGCGGCGCCACCACCCAGTTCGCCGCGGTGCCATTGAACCTCTGTAAACTTTACGATTCGGTGGATTATTTGGTCACTGGGTCGTGGAGCGACAAGGCCTTCAAGGAGGCTCAGAAGTACTGCAAACCTAACGTGATTTGGTCTGGTAAATCTGAGAAGTACGCGAAGATTCCATCTTTTGATGGGTTGGAGCAGAACCCGCAGGCAAGGTATTTGCATATATGTGCGAATGAGACGATTCATGGGGTGGAGTTCAAGGATTACCCGACCCCAAAGAATCCAAATGGTATATTGGTTGCAGATATGTCTTCAAATTTCTGTTCAAAGCCCGTGGATGTGTCAAAATTTGGTGTGATCTATGCTGGAGCGCAGAAGAATGTAGGGCCATCCGGTGTGACTATTGTGATCGTCAGGAAAGATCTGATAGGGAATGCTCAGGATGTGACTCCTGTGATGCTTGATTACAAGATACAGTCTGAGAACAACTCATTGTACAATACTCCTCCCTGTTATGGCATTTACATGTGTGGGTTGGTCTTTGAGGACCTGTTGGATCAAGGGGGTCTGAAGGAGGTTGAGAAGAAGAACAAGAAGAAGGCTGAAATTCTGTACAACGCCATTGATGTTAGCAATGGATTCTACAGATGCCCAGTTGAGAAGTCTGTGAGGTCGTTGATGAATGTTCCGTTTACACTGGAGAAATCAGAATTAGAGGCAGATTTTATTAAGGAGGCAGCCAAGGAGAAGATGGTTCAGCTTAAGGGACACAGGTCGGTGGGTGGCATGAGAGCTTCCATATACAATGCCATGCCTTTGGCTGGGGTTGAGAAGTTGGTGGCCTTCATGAAGGATTTCCAGGCCAGCCATGCATAG 1293 0.4903 MSIATSPHTNFLQKPIRPPNNPTTQNNVFPVTSIRTIKTTPLRHVSIKCAAPTATQTQDRFPGQTQSQDRVFNFAAGPATLPENVLLRAQSELYNWRGCGMSVMEMSHRGKEFLSIIQKAEADLRALLEISPEYAVMFLQGGATTQFAAVPLNLCKLYDSVDYLVTGSWSDKAFKEAQKYCKPNVIWSGKSEKYAKIPSFDGLEQNPQARYLHICANETIHGVEFKDYPTPKNPNGILVADMSSNFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIVRKDLIGNAQDVTPVMLDYKIQSENNSLYNTPPCYGIYMCGLVFEDLLDQGGLKEVEKKNKKKAEILYNAIDVSNGFYRCPVEKSVRSLMNVPFTLEKSELEADFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQASHA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0035 430 MobiDBLite consensus disorder prediction 1 27 - -
Lele50g0035 430 Gene3D Aspartate Aminotransferase, domain 1 326 430 IPR015422 GO:0003824
Lele50g0035 430 FunFam Phosphoserine aminotransferase 326 430 - -
Lele50g0035 430 Hamap Phosphoserine aminotransferase [serC]. 69 429 IPR022278 GO:0004648|GO:0006564
Lele50g0035 430 FunFam Phosphoserine aminotransferase 83 325 - -
Lele50g0035 430 Pfam Aminotransferase class-V 71 418 IPR000192 -
Lele50g0035 430 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 66 429 IPR022278 GO:0004648|GO:0006564
Lele50g0035 430 ProSitePatterns Aminotransferases class-V pyridoxal-phosphate attachment site. 256 275 IPR020578 -
Lele50g0035 430 Gene3D - 84 324 IPR015421 GO:0003824
Lele50g0035 430 TIGRFAM serC_1: phosphoserine transaminase 71 429 IPR022278 GO:0004648|GO:0006564
Lele50g0035 430 CDD PSAT_like 72 426 IPR022278 GO:0004648|GO:0006564
Lele50g0035 430 SUPERFAMILY PLP-dependent transferases 69 426 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0035 Lele-ChrLele50 252414 253706 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0035 50 252414 253706 Lele51g0032 51 218397 219926 hybridization
Lele50g0035 50 252414 253706 Lele52g0037 52 245607 246899 hybridization