Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0034 ATGGGTCGATTTGGGGGTGATTGTTCAGTTTATCGACCAAATTACACAGTGGTCATTTCCTATCACAACAATCCTAACCTAATCAAACCCAAAAATTTCCAAGAAATGGGAACCAGGAAGTTTGGGAACAACAGAAGAGCGTTAAGCGTGATAAATCAGAGTCTAGTGGATGGTCGAGCGTATCCCTGCGTCGTTAACAAGAGGGCATTGCCTGATAAATATGAAATTTGTGAAAAGAAGCAGGCGGATCCAGTGCATCGACCAATCACCAGGAGATTTTCTGCTCAGATTGCTAGCACGCAACAATCTCACGCTGAGGAAAATGAGAAGCCAAATACGTTAATTCCAAACGGGAATGAATTTGGAGATGTCATATTCGTAGACGATGAATACAAGTCACCATCAGATCAGCCAGTGCCTATGTCATTAGAGCAAACAGAACCAACACATGATAAAGTGGATCAGATGGAAGAAGTCGAGATGGAAGATATAATTGAAGAGCCTATTGTGGACATCGATTCTGGTGATGCCAATAATCATCTTGCTGTGGTAGATTATGTTGAAGAACTTCATAACTACTACAGAAAGATGGAGAGTATTAGTTGTGTTGCTCCGAATTATATGGCACAGCAAGACGACATTAATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTTCACGATAAATTTGACCTCATGCATGAGACTTTGTTCCTTACCGTTAATCTCATAGATAGGTTTTTGGCAAAGCAGAACGTGATGAGAAAGAAACTTCAGCTGGTTGGCTTGGTGGCGATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTGCCCTTAGTAGGGGATCTGATCCTTATATCAGACAAAGCTTACACAAGGAAGGAAGTTCTCGAAATGGAGAAGTTGATTCTCAACACATTGCTGTTTAACGTGTCAGTTCCCACGCCATATGTTTTTATGAGGAGGTTCCTGAAGGCAGCTGAAGCAGACAAGAAACTTGAGCTAGCAGCTTTCTTCTTGATGGAGCTATCTCTTGTGGAATATGAGATGTTGAAGTTCCCGCCATCGATGCTAGCTGCAGCTGCAGTCTATGCAGCTCAGTGTACTACTTTTGGCTTCAAACAATGGAGTAAGACGTGTGAATGGCATACCAACTTCTCGGAAGATCAGCTATTAGATTGCTCAAGGATGATGGTTGAGTTCCACCAGAAGGCAGGGACAGGGAAGCTTACAGGGGTATACAGGAAGTACAGCTCATCGAAGTTCAGCTCCATTGCGAAATGTGAAACGGCAAGTTTTCTTCTGGAGAACCGGTTGTAA 1329 0.4289 MGRFGGDCSVYRPNYTVVISYHNNPNLIKPKNFQEMGTRKFGNNRRALSVINQSLVDGRAYPCVVNKRALPDKYEICEKKQADPVHRPITRRFSAQIASTQQSHAEENEKPNTLIPNGNEFGDVIFVDDEYKSPSDQPVPMSLEQTEPTHDKVDQMEEVEMEDIIEEPIVDIDSGDANNHLAVVDYVEELHNYYRKMESISCVAPNYMAQQDDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQNVMRKKLQLVGLVAMLLACKYEEVSVPLVGDLILISDKAYTRKEVLEMEKLILNTLLFNVSVPTPYVFMRRFLKAAEADKKLELAAFFLMELSLVEYEMLKFPPSMLAAAAVYAAQCTTFGFKQWSKTCEWHTNFSEDQLLDCSRMMVEFHQKAGTGKLTGVYRKYSSSKFSSIAKCETASFLLENRL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0034 442 PANTHER CYCLINS 144 422 IPR039361 -
Lele50g0034 442 Pfam Cyclin, C-terminal domain 317 432 IPR004367 -
Lele50g0034 442 SUPERFAMILY Cyclin-like 316 433 IPR036915 -
Lele50g0034 442 Pfam Cyclin, N-terminal domain 191 314 IPR006671 -
Lele50g0034 442 MobiDBLite consensus disorder prediction 96 115 - -
Lele50g0034 442 SMART cyclin_7 321 403 IPR013763 -
Lele50g0034 442 SMART cyclin_7 224 308 IPR013763 -
Lele50g0034 442 ProSitePatterns Cyclins signature. 219 250 IPR006671 -
Lele50g0034 442 FunFam G2/mitotic-specific cyclin-1 312 429 - -
Lele50g0034 442 Gene3D - 203 315 - -
Lele50g0034 442 MobiDBLite consensus disorder prediction 96 117 - -
Lele50g0034 442 SUPERFAMILY Cyclin-like 178 314 IPR036915 -
Lele50g0034 442 Gene3D - 190 430 - -
Lele50g0034 442 CDD CYCLIN 315 402 IPR013763 -
Lele50g0034 442 FunFam G2/mitotic-specific cyclin 203 311 - -
Lele50g0034 442 SMART Cyclin_C_2 317 434 IPR004367 -
Lele50g0034 442 CDD CYCLIN 218 307 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0034 Lele-ChrLele50 245776 249798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0034 17 438 Core Cell Cycle Gene Families AT1G20610 55.658 3.71e-168 478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0034 50 245776 249798 Lele53g1249 53 21096988 21101468 CCT
Lele50g0034 50 245776 249798 Lele54g1222 54 17727771 17728237 CCT
Lele50g0034 50 245776 249798 Lele56g0225 56 1819773 1823218 CCT
Lele50g0034 50 245776 249798 Lele51g0031 51 214202 217297 hybridization
Lele50g0034 50 245776 249798 Lele52g0036 52 240140 243627 hybridization