Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0033 ATGGGAGGTGACAGTGCCGTTGATGATGCCACCGCCACCCAGTTCAAGGGCGGTGAGGGAGTGAATATCAACGTTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCCCCCGTCGGATTGTTCAAGGAGCTTGTCGCTCGGAATTGCGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTCTGGAGGCAGATCATACCGTCCACTTGGTTCGGGGCTTTGCCCCAGCTGCTGCAGCCAATTCAGTTGGTGGGATCAATACCAGTGCTACAAATACCACAACAAATAATGCAAGAGGTGCTGCTAATGAAGGTGGGGGCCTTGGAGGTTCTGGTTTTGGAGATTCACAGTTTCCTGGACTAGGCACCAATGGGCTTGGGGGAAGTGGCATCAATGGCTTGTTTGGAGCAGGCCTTTTGGATCCTGAACAAATGCAGCAATCATTTATTTCCAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTACGAAAATGTTCAAGAGCCATTCTTAGATGCTACAACAATGGCTGGTAATACAGGAAATGACAACTCTAACCCGTTTGCTGCACTTTTGGGCACTCAAGGTGGACAAGCCAGGGATCGATCTGCTAATCCTTCAACTACTAGTGCTGAAGCAACTGCTGGCTCTCCCTCCCCTAATACTAACCCGCTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGCAAGGACAACCACAGGTGGGGACACTAGGCAGCAGGCACCCACTGGCTTAGGAGGACTTGGTTTGCCGGATTATCAAGGTCTGCTGGGTTCTGTGCCTGATCCCGCTTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTCGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAATGACTCAAAATCCTGAGTTCCTTCGCTTGTTGTCTTCACCCGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAACTCTTCTTTCGCAGCTTGGTCGGCCACCGTCAACACAGGAATCAGGTCAGACTGGTGGAGGCACTGGAACGATGAATAACTCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGCCTTGCGGTTCCGAACAGATCAAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACACAAGAGAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCACGCGGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG 1659 0.4828 MGGDSAVDDATATQFKGGEGVNINVRCSNGSKFSVQISLESPVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSVGGINTSATNTTTNNARGAANEGGGLGGSGFGDSQFPGLGTNGLGGSGINGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSANPSTTSAEATAGSPSPNTNPLPNPWTSTGSGGAQNNTARTTTGGDTRQQAPTGLGGLGLPDYQGLLGSVPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREMTQNPEFLRLLSSPETMQQLLSFQQTLLSQLGRPPSTQESGQTGGGTGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0033 552 PANTHER UBIQUILIN 16 547 IPR015496 -
Lele50g0033 552 CDD Ubl_Dsk2p_like 21 93 - -
Lele50g0033 552 MobiDBLite consensus disorder prediction 276 365 - -
Lele50g0033 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Lele50g0033 552 MobiDBLite consensus disorder prediction 276 355 - -
Lele50g0033 552 CDD UBA_PLICs 510 548 - -
Lele50g0033 552 Gene3D - 492 552 - -
Lele50g0033 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Lele50g0033 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Lele50g0033 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Lele50g0033 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Lele50g0033 552 Gene3D - 196 254 - -
Lele50g0033 552 MobiDBLite consensus disorder prediction 457 480 - -
Lele50g0033 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Lele50g0033 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Lele50g0033 552 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Lele50g0033 552 Gene3D - 10 103 - -
Lele50g0033 552 SMART CBM 365 407 IPR006636 -
Lele50g0033 552 SMART CBM 411 446 IPR006636 -
Lele50g0033 552 SMART CBM 201 240 IPR006636 -
Lele50g0033 552 SMART CBM 151 188 IPR006636 -
Lele50g0033 552 SMART uba_6 510 548 IPR015940 -
Lele50g0033 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Lele50g0033 552 MobiDBLite consensus disorder prediction 110 133 - -
Lele50g0033 552 SUPERFAMILY Ubiquitin-like 14 108 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0033 Lele-ChrLele50 235007 240452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0033 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 8.31e-06 43.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0033 50 235007 240452 Lele51g0030 51 203970 209647 hybridization
Lele50g0033 50 235007 240452 Lele52g0035 52 230511 235921 hybridization