Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0029 ATGGTAGTGAAATTTTTTGCTTCATGTGGATCTACCAAGCCAGCGAAGCAGCGTTGTGAATTTCGCACAGTGACCCCTGGAAAAAGAAATGAATATAATTTAACGGGGAAAAAGAATTGTGGTAACCAAAGGGTAAGCGATCCTCTCTTCTCTGGCTCCATCAAGACTCCTTCATTACTGCTGTCTCGGGCCTTGCGGGGGTCATTTTATGCTAGTTTCGTCGGCTGGGAGCTTGATATGGGTCTATGCTTTGGGTCTCCCGCTCACGATGACGGACCGGCGTCTAGTGTCACCAGAAATCCATATTCAGGTTCAGCGAGTACTGACAGTAGGAACGTTGGGTTCTCTACTACGAACAGCAGTGCTGCAAAGAGTCAATTTTCAGAACTAGCAAGCGGGAGCCTCGGGGGTTCCCTTCCTTCCCCCAACGGGCAAATTCTAGAAACTCCAAACCTGAATGTATTCAGTTTTGCAGACTTGAAAGCCGCCACAAAGAACTTCAAACACGATACATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACACTGGCACCATCTAAGGCAGGGTCTGGAATTGTGGTTGCTATTAAAAAATTGAACCCAGAAAGTGTGCAAGGATTCCAAGAGTGGCAGTCAGAAGTCAATTTCTTAGGAAGGCTTTCTCATCCCAACTTGGTCAAGCTATTGGGTTACTGTTGGGATGCTGAGGAGCTGCTGCTTGTGTATGAGTTCATGCCGAAGGGAAGTTTGGAGAATCATCTCTTTAGAAGAAATCCTAACATCCAACCACTTTCTTGGAACATGCGACTCAAAATAGCTATTGGTGCAGCTCGAGGCCTGGCCTTTTTGCACACTTCAGAAAAGCAAGTGATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGAATTATAATGCAAAAATTTCTGACTTTGGCTTGGCGAAATTGGGGCCATCAGGGGAAGAATCACATGTTACAACTAGGGTTATGGGCACTTATGGCTATGCTGCTCCAGAATATGTTGCTACAGGCCACTTCAAAAGAAAGTTGAAAACAGTTATGGACGCTAGGATTCAGGGTCAATATTCACTCAAGGCAGCATCACAGGCAGCTAAGCTTACTCTGAAATGCCTACAACCTGACCCTAAACACCGTCCTTCCATGAAAGAAGTAGTTGAGGAATTGGAACGCATCGAGCATTGA 1233 0.4517 MVVKFFASCGSTKPAKQRCEFRTVTPGKRNEYNLTGKKNCGNQRVSDPLFSGSIKTPSLLLSRALRGSFYASFVGWELDMGLCFGSPAHDDGPASSVTRNPYSGSASTDSRNVGFSTTNSSAAKSQFSELASGSLGGSLPSPNGQILETPNLNVFSFADLKAATKNFKHDTLLGEGGFGKVYKGWLDEKTLAPSKAGSGIVVAIKKLNPESVQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDAEELLLVYEFMPKGSLENHLFRRNPNIQPLSWNMRLKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGEESHVTTRVMGTYGYAAPEYVATGHFKRKLKTVMDARIQGQYSLKAASQAAKLTLKCLQPDPKHRPSMKEVVEELERIEH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0029 410 Gene3D Phosphorylase Kinase; domain 1 151 252 - -
Lele50g0029 410 MobiDBLite consensus disorder prediction 94 118 - -
Lele50g0029 410 Gene3D Transferase(Phosphotransferase) domain 1 253 357 - -
Lele50g0029 410 Gene3D Transferase(Phosphotransferase) domain 1 358 410 - -
Lele50g0029 410 PANTHER OS01G0588500 PROTEIN-RELATED 357 408 - -
Lele50g0029 410 SUPERFAMILY Protein kinase-like (PK-like) 145 405 IPR011009 -
Lele50g0029 410 FunFam Serine/threonine-protein kinase BIK1 137 252 - -
Lele50g0029 410 Pfam Protein tyrosine and serine/threonine kinase 170 358 IPR001245 GO:0004672|GO:0006468
Lele50g0029 410 FunFam Os07g0541700 protein 253 342 - -
Lele50g0029 410 ProSiteProfiles Protein kinase domain profile. 167 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0029 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Lele50g0029 410 MobiDBLite consensus disorder prediction 96 118 - -
Lele50g0029 410 ProSitePatterns Protein kinases ATP-binding region signature. 173 206 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0029 Lele-ChrLele50 215791 219870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0029 155 405 Glycoside Hydrolase AT3G07070 43.919 2.41e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele50g0029 PK_Tyr_Ser-Thr 7.7e-36 CL0016