Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0020 ATGGCAGTTCTGAGTGCCTGTAGCCATGCTGGACTTGTGGATGAAGGGCTTAGGTATATTAGATTGATGACTAGTGACTATGATGTAACTCCAGATCAAGAGACCTATGTTTGTGTGGTGGATTTGCTTGGACGAGCGGGGAGAATAAAGGAAGCTTATAGCCTAATAGAAGCTATGCCATTCAAGCCAAATGAAGCGGCCTGGACAGCCCTACTTGGAGGATCTGAAGCGCACAAACTACCAAGTATGGCCAAATTAGCAGCTCTGAAGCTGATAAGAGGTATTGGAAACAAGAAAGAGGTAGCCCGGAGTTGGATTGAATTAAAAGACCATGTCCATAGCTTTGTTGGTGGAGATGGAGATAACAGTTTCTCAGAATGGGCAGGTGCTTCAGGGTTCGCCATCTGTGGCCCCGTAGGGAGATTCTCCGTCGACGCCATGATCGTCCTTTTTCAAGCTGGCTTTTGTTTGGGGTTAAATTCAATTCCAACTTTGACCCATTTGGCTCCTCTGAGTATTGTTGCTGATGCGGTTGATATTGCTGCCAAGAGTGTGGTAATGGTGGAAGACGTGCTTGCTTTTATGAAGAATAGGCCTACTTTAAATTTGGGAGTGTCTTGGCCTCGGGCATGGCAATCATTTGCATTGTTTGGAGCATTTGGAGCTTTGGGTTACTTTGCTTTTGGCGAAGAAACCAAAGATGTTTTCACAACCAATCTAGGAAAAGGCTTAGTAAGCACTCTGGTACAGTTAGGTCTCTGTATAAACCTTTTCATCACGTTTTCGTTGATGATGAACGCAGTATATGAGGTGGTAGAGAGAAGTTTCTGTGAATCCAGGAAGCAGCATTGGCGTCGTCCTAAGCTTCGTGTTCCCTGCCCTGTTTCCCTGTTTGGTGTTCAAAGAAGAGTTGGGTTGAAGTTGCATCGTTTTAGACGGAGCAATCATGGATTTTGGGTTCATGGTCGCAGTCACTGAGGGGTGAGAAGAGAAGAAGAGGAAACGATGTCCTGCTCCTCGTCGTCAGGGTCCGAGGAGGAGGATGAGGGCTTCGAATCCTACAGGAAAGGAGGTTACCATGCCGTCCGGATCGGCGATCAGTTCGCCAGCGGGAGGTACATAGCACAGAGGAAGCTCGGTTGGGGTCAGTTCTCTACTGTGTGGCTTGCTTACGATACTCGCACCTCTACATACGTTGCTCTTAAGATCCAGAAGAGTGCAGCCCAGTTTACTCAGGCTGCCCTTCATGAGATTAGTGTTCTTTCATCTATTGCTGATGGTGACCCTTCAAATTCAAAGTGTGTTGTCCATTTGATCGATCACTTTAAGCATACAGGTCCAAATGGACAGCACCTTTGTATGGTCCTTGAGTTTCTTGGGGATAGTTTGCTTCGTCTGATCAGATATAACCGTTACAAAGGCCTTCCATTAAATAAAGTTAGGGCGATTTGCAAATGTATTTTGATTGGTCTGGATTACTTGCACAGAGAACTTGGTATAATCCACACTGATCTAAAACCTGAAAACATTCTTCTCTTTTCTTCTATTGATGCTTCCAAAGACCCTGTCAGATCTGGACTTTCCCCAATCCTAGAGAGGCCAGAGGGAAACCCAACCGGTGGAGTCACGAGTCTTATTGAGAAAAGGTTAAAAAGGAGGGCAAGGAGGGCAGTTGCTAAGATATCTGAAAAGCGTGATTCAATGGGAGGAGCAGGACAAGCTCGGCAGTCTGAAAGAAATGTTGAAGAGATTGATATGAGATGCAAGATAGTGGATTTAGGAAATGCATGCTGGGCTGATAAGAAAATTGCTGAAGAAATCCAGACAAGGCAGTACAGAGCTCCTGAAGTAATATTGCAGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCGCTGCTTTTGAACTTGCCACTGGTGATATGATGTTTACCCCAAAAGGTGGACAAGACTTTAGTGAAGATGAGGATCACCTAGCCTTGATGATGGAACTTCTTGGAAAAATGCCCCGTAGGGTTGCAATATCTGGAGCTCGATCCAAGGATTACTTTGATAGACATGGGGATCTAAAAAAGATTCGGAGGCTAAAATTCTGGTCGCTTGATAAATTGTTGATTGATCGATACAAATTTTCAGAAAATGATGCAAGGGAGTTCTCAGACTTTCTTCTGCCGCTTCTTGATTTTGCTCCAGAGAACCGACCAACAGCCCAGCAGTGCCTGCAACATCCTTGGTTTAGTGGTAAGGATTCAACTCCATGTGAAAAGAGAAATGAGCCTAGTGTGGAAAAGGTTAATGTTGGGATGAGCGACCTTAAAATCAAGGTGGGAAAGTGA 2343 0.4503 MAVLSACSHAGLVDEGLRYIRLMTSDYDVTPDQETYVCVVDLLGRAGRIKEAYSLIEAMPFKPNEAAWTALLGGSEAHKLPSMAKLAALKLIRGIGNKKEVARSWIELKDHVHSFVGGDGDNSFSEWAGASGFAICGPVGRFSVDAMIVLFQAGFCLGLNSIPTLTHLAPLSIVADAVDIAAKSVVMVEDVLAFMKNRPTLNLGVSWPRAWQSFALFGAFGALGYFAFGEETKDVFTTNLGKGLVSTLVQLGLCINLFITFSLMMNAVYEVVERSFCESRKQHWRRPKLRVPCPVSLFGVQRRVGLKLHRFRRSNHGFWVHGRSHXGVRREEEETMSCSSSSGSEEEDEGFESYRKGGYHAVRIGDQFASGRYIAQRKLGWGQFSTVWLAYDTRTSTYVALKIQKSAAQFTQAALHEISVLSSIADGDPSNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVRAICKCILIGLDYLHRELGIIHTDLKPENILLFSSIDASKDPVRSGLSPILERPEGNPTGGVTSLIEKRLKRRARRAVAKISEKRDSMGGAGQARQSERNVEEIDMRCKIVDLGNACWADKKIAEEIQTRQYRAPEVILQAGYSFSVDMWSFACAAFELATGDMMFTPKGGQDFSEDEDHLALMMELLGKMPRRVAISGARSKDYFDRHGDLKKIRRLKFWSLDKLLIDRYKFSENDAREFSDFLLPLLDFAPENRPTAQQCLQHPWFSGKDSTPCEKRNEPSVEKVNVGMSDLKIKVGK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0020 780 ProSiteProfiles Protein kinase domain profile. 373 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0020 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Lele50g0020 780 Gene3D Transferase(Phosphotransferase) domain 1 427 748 - -
Lele50g0020 780 CDD STKc_SRPK 362 748 - -
Lele50g0020 780 FunFam Protein kinase superfamily protein 359 458 - -
Lele50g0020 780 SMART serkin_6 373 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0020 780 Pfam Transmembrane amino acid transporter protein 214 279 IPR013057 -
Lele50g0020 780 Gene3D Phosphorylase Kinase; domain 1 359 458 - -
Lele50g0020 780 MobiDBLite consensus disorder prediction 330 350 - -
Lele50g0020 780 SUPERFAMILY Protein kinase-like (PK-like) 367 755 IPR011009 -
Lele50g0020 780 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Lele50g0020 780 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Lele50g0020 780 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 330 559 - -
Lele50g0020 780 FunFam Serine/threonine-protein kinase SRPK 452 748 - -
Lele50g0020 780 Pfam Protein kinase domain 587 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0020 780 Pfam Protein kinase domain 374 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0020 780 Pfam PPR repeat 2 25 IPR002885 -
Lele50g0020 780 Pfam PPR repeat 35 59 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0020 Lele-ChrLele50 153343 162194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0020 339 768 EF-hand Containing Proteins AT5G22840 49.378 3.59e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele50g0020 Pkinase 6.1e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0020 50 153343 162194 Lele50g0020 50 153343 162194 ECH
Lele50g0020 50 153343 162194 Lele51g0019 51 119064 122219 hybridization
Lele50g0020 50 153343 162194 Lele52g0021 52 141668 145131 hybridization