Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0005 ATGAGTAATACCAACGAAAACAAGGAATCTGGCCAGAATGTGCCAGAGAGTGGGGACCAAAGCCAGCGGTTTGTTGATGCACAAGTTCAACTCAAGGCTTCTTCTACTTCTGTTCCAGAAGAGATAACCACGAATAGTGTTGAAAATGTGAAGGTAGAGGCGCCTGCTGGGGATAAAAATCTGGAACCAGAGGTTATGTCGAAGGGTACTCAACAAGAAGTTCAAAATGTTCTTCACTCCGTCCCATTAGAATCCGATGCTCAAATTTTGGTTAAAGTTGAGTCAGAACACGTATCTGATGTGAAGAGCGAAGTCAAAGAATTTTCACAGACAGATACGGGGATAGAGAGTGATGCTCTTGTTGGTGAGAAAAATGCTGATACAGCTGAAACAGTTAAGAATGTCAAGCCTGAAGCTTGTGGAGTCACTGCCAGTAAAACTTGCAACAATGGTGATTCCACACCCATGGGTCATAACGAACCTGCAACACCGCTACCTGTTCCTGTTGATACAAACACTGGGATTGAGAATGGCATAAAAGTTGAGACTAAGGTCCATGAAGGGCATGCTGCAACATTTGTAGATAAAGGGAATTCAAACACGAAGCACTCTTTTTTAGATATTGGCTATGATGGAAATGAGTCAGGTACCGAAGCAGAGCAGTCTGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGACAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGAGGGGCTTAATTGTCTCAAGTTGTGGAGAGCAGTGACCAGACTGGGTGGCTATGACAAGGTAACCTCATGTAAATTATGGCGGCAAGTTGGAGAGTCTTTCAAGCCTCCAAAAACATGTACAACTGTATCATGGACATTTCGAGGATTTTATGAAAAGGCTCTTCTTGATTATGAAAGGCATAAAACAATAGGTGGTGAGCTTACTGTTCCTATTGCTTCTCATTCAGAACCTATAAATATCGAAAATCAGGCTTCAGCATCGGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGGCTTCTTGGTAACGGTGAAGTTAGTGACCCGATTATTAAGGATAGGACGTCCATGCCCATGCATAAGCGTGAAAAGCAGCTTAAAAGCATCAATCTGCTAAAACGTAAGAAACCATCTTACATGGATAATGCAGTTAAAGCTGCACGCAGTAAACCATCAAAGCCACAATTGGACACCGCAGTTGTTGATATTGGACCTCCTGCTGATTGGGTAAAGATAAATGTCCAAAAAACTAAGGATTGTTTTGAGGTCTATGCATTAGTTCCTGGCCTTCTCCGAGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGCTTAGTCATTAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGGGTGACACCTTTCAAAAAGGTTGTAAGCTTGCCGTCAAGGATTGATCCTCATCAAACATCAGCTGTGGTTACATTGCACGGACAGCTGTTTGTTCGTGTCCCATTTGAACAATCAGATTAG 1539 0.4353 MSNTNENKESGQNVPESGDQSQRFVDAQVQLKASSTSVPEEITTNSVENVKVEAPAGDKNLEPEVMSKGTQQEVQNVLHSVPLESDAQILVKVESEHVSDVKSEVKEFSQTDTGIESDALVGEKNADTAETVKNVKPEACGVTASKTCNNGDSTPMGHNEPATPLPVPVDTNTGIENGIKVETKVHEGHAATFVDKGNSNTKHSFLDIGYDGNESGTEAEQSAFMKELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTIGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSMPMHKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0005 512 SMART bright_3 219 310 IPR001606 GO:0003677
Lele50g0005 512 FunFam AT-rich interactive domain-containing protein 3 218 317 - -
Lele50g0005 512 Gene3D - 408 512 IPR008978 -
Lele50g0005 512 Pfam Hsp20/alpha crystallin family 429 510 IPR002068 -
Lele50g0005 512 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 512 IPR002068 -
Lele50g0005 512 CDD ARID 220 305 - -
Lele50g0005 512 CDD ACD_sHsps-like 427 507 - -
Lele50g0005 512 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 48 511 IPR045147 GO:0006357
Lele50g0005 512 SUPERFAMILY HSP20-like chaperones 421 508 IPR008978 -
Lele50g0005 512 Gene3D - 218 313 IPR036431 GO:0003677
Lele50g0005 512 FunFam AT-rich interactive domain-containing protein 3 404 512 - -
Lele50g0005 512 ProSiteProfiles ARID domain profile. 218 309 IPR001606 GO:0003677
Lele50g0005 512 SMART ARID_2 215 305 - -
Lele50g0005 512 SUPERFAMILY ARID-like 211 321 IPR036431 GO:0003677
Lele50g0005 512 MobiDBLite consensus disorder prediction 1 26 - -
Lele50g0005 512 Pfam ARID/BRIGHT DNA binding domain 221 305 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0005 Lele-ChrLele50 34169 43702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0005 213 510 ARID Transcription Factor Family AT1G76510 64.262 1.27e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele50g0005 HSP20 8.9e-06 CL0190