Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1652 ATGGCATCGGCCTTTATCAAGCTTGATGATTCCCCCATGTTTCAGAAGCAGGAAAAATTGGAGGGTGGGAGGAAAGAAATGTGCGGTGCATATGTATTAGATGAACGTGCAACGCCTGGGTACACGATAGTCTACAGTAAGAGGACGTCTTATTCTGGTTTGTACTTTTCCAATGTCAATGGAATTTCTTCATCTATTCAAAACCAGGCAGCTTTAGGAGAAGCTCATAATGGAGACATTGCGTTTGCTGACGCTTTAGAAGTATTTGGTGGTGGACAGGATGATCCTGTTAGTGTATCGATTGGAGGACCCGTCATATCTAAATTTATTAGTGCACTTCGTGAGCTTGCGTCTTTCAAAGAGCTACTCCGGTCACAGGTGGAGCATGTGTTGATTGATCGCTTGGTGCAGTTTATGAATGTTGATTTACGAGATGCCAAGGATTCTCGCACTCGTTTCGATAAAGCTGTACATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACGCGGGAAGACATTGTTGCTGGATTAGAAGAGGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAATTCTTGGAGTCCTTTAGTGCAATAATGGATGCTCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAGATGGCCAACGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACTTAAGAGCTTCTAGTAATGCTGATACTTTATCTGGTGCTGACAGCAGCCGCATTGTTGGTTTGAACTCATATAAGAGCTCTGAAGTAGGGATCCAGTCTGTGGCCCAGGGTGAGGCCTCTCAATCATATCATTTTAGTAGAACAACTGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGGGCAGCATCGCTTAATGAGGAAATTCTGAGTTGCCGTGGCATTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTACGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGGTGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTTTTCAACTCTCAGTTTCTTCAACAGCATAGCCTTGTATCTTTGACTGCACACATATATTCCAATGAAGTGGAGAGTGTCTCTAAGACTTTATGGGGAATTCCTGGAAATAATAGGTGTGCCGAGTGTAGTGCAACTGAACCAGATTGGGCATCTCTTAACCTTGGGATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCTATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTTTGGACTTATTCCGGAACTTGGGTAATGCATATTTTATTCAACTTGGTTTAATGGAAAGAAAACGAAAGCAATTATACTTGGCCCTCTCTGATTCATCCTTGAATGATAATGTGGATAGTGCTTTGACATTGAAACCAGTAAGAAGTGCTATTTTCTGTATCGAAGTGGTGATTATAACTAAAGATTGGAATCAGGGACCAAGAGAGTACATACTTAAGTCAAAGACGTTAAGGCTTTTTGAAGAGGCCAATCACTTCTTAGGTCTGATCACGTCATTAAGCAGCAATATGGAGGCTGTGCTAGGGTTATCAGCTGTGCAGCATGGGATTTCAGCATCTGTATTAAGAAGTTTTAGCTCTGATCCAAAGTATTATGGGAAAAATGAGTCAAATCCGCCAATTAAACCATGCCCCACAGATGCCTTTCAAGAGAAGGAAAAGTACATCCATGCGAAGTACGTGGAGAAGTCACTGATCAATAAAGAGACTGTACCCGGGAACCCTTCTCCTGCCTTGAGAATCTGGCAGGCAGTTCAGGCTTTGAACATACAAGAAGTGTATCGCCTCATTGTCACCTCAGATGCAATTCTGGTAAACATCAAATATGATGATGTGGTTCACCATGCTGAGGCAGAAAATTTGGATTTAAGCTGTAGCACAACTGAAATAGGTTGTTCGCTGTTGCATCTGGCATGTCATTCTGACAGTGAACTGATGGTTGAGTTGTTGCTTCAATTTGGTGCGGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACTATTGCATTTCTAGAGGAAAAAATCCTTTGGCAAAGCTTTTACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGATTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTCGCTGAATCCGCTTAA 2409 0.4151 MASAFIKLDDSPMFQKQEKLEGGRKEMCGAYVLDERATPGYTIVYSKRTSYSGLYFSNVNGISSSIQNQAALGEAHNGDIAFADALEVFGGGQDDPVSVSIGGPVISKFISALRELASFKELLRSQVEHVLIDRLVQFMNVDLRDAKDSRTRFDKAVHSYDQAREKFVSLKKNTREDIVAGLEEVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEMANVEQDKLAKRIQEYRTQAELDNLRASSNADTLSGADSSRIVGLNSYKSSEVGIQSVAQGEASQSYHFSRTTEQNSGMFGRFRSRHNRAASLNEEILSCRGIDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRVDWVNKITGAITSLFNSQFLQQHSLVSLTAHIYSNEVESVSKTLWGIPGNNRCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYFIQLGLMERKRKQLYLALSDSSLNDNVDSALTLKPVRSAIFCIEVVIITKDWNQGPREYILKSKTLRLFEEANHFLGLITSLSSNMEAVLGLSAVQHGISASVLRSFSSDPKYYGKNESNPPIKPCPTDAFQEKEKYIHAKYVEKSLINKETVPGNPSPALRIWQAVQALNIQEVYRLIVTSDAILVNIKYDDVVHHAEAENLDLSCSTTEIGCSLLHLACHSDSELMVELLLQFGADVNVRDSHGKTPLHYCISRGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1652 802 ProSiteProfiles PH domain profile. 360 394 IPR001849 -
Lele49g1652 802 Gene3D Arf GTPase activating protein 409 527 IPR038508 -
Lele49g1652 802 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Lele49g1652 802 Coils Coil 239 259 - -
Lele49g1652 802 SMART 5bar 13 230 IPR004148 GO:0005515|GO:0005737
Lele49g1652 802 SMART PH_update 287 396 IPR001849 -
Lele49g1652 802 PANTHER CENTAURIN/ARF 4 498 IPR045258 GO:0005096
Lele49g1652 802 SUPERFAMILY PH domain-like 342 409 - -
Lele49g1652 802 Pfam Putative GTPase activating protein for Arf 422 501 IPR001164 GO:0005096
Lele49g1652 802 Gene3D - 322 401 IPR011993 -
Lele49g1652 802 SUPERFAMILY ArfGap/RecO-like zinc finger 420 498 IPR037278 -
Lele49g1652 802 PRINTS HIV Rev interacting protein signature 432 451 IPR001164 GO:0005096
Lele49g1652 802 PRINTS HIV Rev interacting protein signature 451 468 IPR001164 GO:0005096
Lele49g1652 802 PRINTS HIV Rev interacting protein signature 474 495 IPR001164 GO:0005096
Lele49g1652 802 CDD ArfGap 426 496 - -
Lele49g1652 802 SMART ANK_2a 742 771 IPR002110 GO:0005515
Lele49g1652 802 SMART ANK_2a 709 738 IPR002110 GO:0005515
Lele49g1652 802 ProSiteProfiles ARF GTPase-activating proteins domain profile. 420 495 IPR001164 GO:0005096
Lele49g1652 802 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Lele49g1652 802 Gene3D Arfaptin homology (AH) domain/BAR domain 59 262 IPR027267 -
Lele49g1652 802 SUPERFAMILY Ankyrin repeat 706 794 IPR036770 -
Lele49g1652 802 Pfam BAR domain of APPL family 104 243 - -
Lele49g1652 802 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Lele49g1652 802 SMART arf_gap_3 420 538 IPR001164 GO:0005096
Lele49g1652 802 Gene3D - 660 798 IPR036770 -
Lele49g1652 802 ProSiteProfiles Ankyrin repeat region circular profile. 742 773 - -
Lele49g1652 802 SUPERFAMILY BAR/IMD domain-like 72 253 IPR027267 -
Lele49g1652 802 Pfam Ankyrin repeats (3 copies) 714 787 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1652 Lele-ChrLele49 18669878 18680260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1652 430 494 C2H2 Transcription Factor Family AT3G07940 53.846 3.74e-17 80.9