Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1645 ATGCTATCTGATATGGCGGCATCTTCTTCGTCGGCGGCGTCGCTGTTTGGAATCAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTTATCAACTCCAACTTCGTCAACAACCGCAGCTGCACCACCGCAGAAAAAGAAGAGAAACCAACCAGGAAAACCGAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTTCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTCGGTGACCTCACTGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGGTGCGACTGTGGAACTCTCTTCTCCAGGCGAGACAGTTTTATCACGCACAGGGCTTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGGCAGCCTTCCAACTTGATTAGTGGGAGCCAGCTCTATGGAAGTAACAATGTTTCTTTAGGCTTATCTCAGGTGGCCTCTCACATCTCCGCCGTCCATGACCATAACCCCCACAATCAAACCGGGTGCGACATTTTGCAAGCCACCGCGGCTTCTCGGGCTGCCGGCCATTTCGACCACCTTCTCCCACCATCCTTAATCAGACCACCACCACCACCGCAGGTGTCGCCCAATGTTGCTTCTCCTCCGCCCTTCTTCGTGCCGGAGAACTATCACCACCATGATCATCATCAGCAAAACAAACAATTCCATGGACTCATGCAATTCTCTGATCTTCATCACAACAGCAGTAACAATTCTCCAACATCTGCTTCTAATAACAGCACCAACCTCTTCAACCTTCCCGCATTCCTCTCCAACACCGTCAATACTAACAGTTCTTTATCCGATCACTTGGGCAACAACAGAAGCGCTGCCGTGGACGGCCATAACAACTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTCCATAACAACAACAGCAGCAGTGGCATCGCTCACATGTCTGCAACCGCACTGCTTCAAAAGGCTGCTCAAATCGGTGCAAGTTCTAGCAACAACAGCACCACCGCCTCGCTTCTGAGAAGCTTCGGAAGCTCCTCGTCCACCATCACCGGATCCAAGTCTGATCATCACCACGACAACAGGCCGCCACCACAGCAGCTGGTCGGAGCAAACTATGGCGCTATTTTCGGAGGGTCCTCGTCGACCAACAACGACGATCGGAACAGTAACCTTCAAGATCTGATGAACACATTCAGTACTGTTGGTGGGTATGAAGGATACGATCATCATCATCAACAAAACAACTCGAACACAAGAGACCAGAAACTGCCCGCAGGATCTGACAGGCTGACTAGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGGATTTCCCCCAGAGATCATTATCATCATCAGCAGCAAGTGTTCATGAACTTGGGTTCTTTGGAGAATCACAGAAACAATAACAATAACAATAATGGTGCGCCGTCAGGCCAATCTTTTGGAGGAGGAGGAGGGAATTTTCAGTGA 1755 0.4934 MLSDMAASSSSAASLFGIRGDQNPMNQQQHLSTPTSSTTAAAPPQKKKRNQPGKPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLISGSQLYGSNNVSLGLSQVASHISAVHDHNPHNQTGCDILQATAASRAAGHFDHLLPPSLIRPPPPPQVSPNVASPPPFFVPENYHHHDHHQQNKQFHGLMQFSDLHHNSSNNSPTSASNNSTNLFNLPAFLSNTVNTNSSLSDHLGNNRSAAVDGHNNFFSDQITSSSAPSLFSTSLHNNNSSSGIAHMSATALLQKAAQIGASSSNNSTTASLLRSFGSSSSTITGSKSDHHHDNRPPPQQLVGANYGAIFGGSSSTNNDDRNSNLQDLMNTFSTVGGYEGYDHHHQQNNSNTRDQKLPAGSDRLTRDFLGVGQIVRSMSGGISPRDHYHHQQQVFMNLGSLENHRNNNNNNNGAPSGQSFGGGGGNFQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1645 584 MobiDBLite consensus disorder prediction 1 45 - -
Lele49g1645 584 MobiDBLite consensus disorder prediction 419 441 - -
Lele49g1645 584 MobiDBLite consensus disorder prediction 1 60 - -
Lele49g1645 584 FunFam protein indeterminate-domain 12-like 54 122 - -
Lele49g1645 584 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Lele49g1645 584 Gene3D Classic Zinc Finger 55 122 - -
Lele49g1645 584 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 546 IPR031140 -
Lele49g1645 584 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lele49g1645 584 MobiDBLite consensus disorder prediction 465 489 - -
Lele49g1645 584 SMART c2h2final6 116 146 IPR013087 -
Lele49g1645 584 SMART c2h2final6 75 97 IPR013087 -
Lele49g1645 584 SMART c2h2final6 151 171 IPR013087 -
Lele49g1645 584 MobiDBLite consensus disorder prediction 419 516 - -
Lele49g1645 584 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Lele49g1645 584 Gene3D Classic Zinc Finger 129 208 - -
Lele49g1645 584 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Lele49g1645 584 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Lele49g1645 584 MobiDBLite consensus disorder prediction 557 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1645 Lele-ChrLele49 18584094 18587376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1645 45 536 IDZ Gene Family AT2G02070 47.865 2.93e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g1645 zf-C2H2_jaz 3.6e-05 CL0361