Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1626 ATGAAGGGCCACGAGAGGCCATTGACGTTTCTCAAGTACAACAGAGATGGAGATCTTCTTTTCTCTTGTGCTAAGGATCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAACGCTTGGGCACTTATCGTGGACACAACGGTGCTGTTTGGTGCTGCGATGTCTCAAGAGATTCAATGCGACTTATAACGGGCAGTGCGGATCAGACGGCGAAGCTGTGGAACGTTCAAACTGGGCAGCAGTTGTTCACGTTCAATTTTGATTCTCCTGCTAGGTCTGTGGATTTCGCTGTGGGCGACAAACTTGCTGTTATGACTACTGATCCCTTCATGGAATTGCCTTCTGCAATTCATGTCAAACGCATTGCTAAAGACGCCAGTGACCAGACTGGCGAATCCATACTTGTTATCAAAGGCCCTCAGGGAAGAATAAATAGAGCCATTTGGGGGCCACTAAACAAAACCATTATTAGTGCTGGAGAAGATTCAGTGATCCGTTTATGGGATTCTGAGACAGGAAAGCTACTTAAGGAGGTAGACAAGGAATCTGGCCACAAAAAGACAATAACATCTCTTGCAAAATCCGCAGATGGTTCCCATTTCCTTACTGGCTCTCTTGATAAATCGGCTAAGCTTTGGGATGCCAGATCATTGTCTCTTATCAAGACATATGTAACAGAACGCCCAGTCAATGCAGTGGCCATGTCACCTCTTCTTGACCATGTGGTGCTTGGAGGTGGTCAAGACGCATCAGCTGTTACTACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTTTTTGACAAGATTCTCCAAGAAGAAATTGGGGGTGTCAAGGGACATTTTGGACCAATTAATGCACTTGCCTTTAATCCTGATGGCAAGAGCTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGGCTGCATCACTTTGACCCAGATTACTTCAATATTAAGATTTAG 966 0.4555 MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVMTTDPFMELPSAIHVKRIAKDASDQTGESILVIKGPQGRINRAIWGPLNKTIISAGEDSVIRLWDSETGKLLKEVDKESGHKKTITSLAKSADGSHFLTGSLDKSAKLWDARSLSLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 174 - -
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 217 - -
Lele49g1626 321 CDD WD40 2 309 - -
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 309 IPR001680 GO:0005515
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 309 - -
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 172 214 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 1 33 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 272 311 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 217 256 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 36 75 IPR001680 GO:0005515
Lele49g1626 321 SMART WD40_4 130 169 IPR001680 GO:0005515
Lele49g1626 321 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Lele49g1626 321 Pfam WD domain, G-beta repeat 38 75 IPR001680 GO:0005515
Lele49g1626 321 Pfam WD domain, G-beta repeat 183 214 IPR001680 GO:0005515
Lele49g1626 321 Gene3D - 1 321 IPR015943 GO:0005515
Lele49g1626 321 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 42 IPR001680 GO:0005515
Lele49g1626 321 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 320 - -
Lele49g1626 321 SUPERFAMILY WD40 repeat-like 2 309 IPR036322 GO:0005515
Lele49g1626 321 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Lele49g1626 321 PRINTS G protein beta WD-40 repeat signature 62 76 IPR020472 -
Lele49g1626 321 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 80 - -
Lele49g1626 321 ProSitePatterns Trp-Asp (WD) repeats signature. 62 76 IPR019775 -
Lele49g1626 321 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 321 IPR027525 GO:0003743|GO:0005737|GO:0005852
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 84 IPR001680 GO:0005515
Lele49g1626 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1626 Lele-ChrLele49 18299974 18302838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1626 1 321 Eukaryotic Initiation Factors Gene Family AT2G46290 79.567 0.0 547