LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g1624	ATGGGAATAAGAGAAGGAGAGATGATAAGGGGTTTGGCTACTTGGTTGGTGGCCCCCAACTTTCCAAACCCATCATCTTCAATTCTGCTATGCTCACAGTGGCTAGCCTATTCGGTTCGCTTGACTTTCCACAACAACATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCAGAGAAGAAAACCCAACTCATCAAGTGACACAACAGCAACATCAACAACAACATCATCAATCCTCCACAGCTGTTTCCTCGACTGCTCCAGACACTGTAGTCCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTCCACAGAAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTGGGTGACCTCACTGGAATTAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGCGACTGTGGAACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGCGATGCCCTAGCTCAGGAGAGTGTGAGGAACCCTACATGCTTAAACTCTATGGCCACTCATCTTTACGGCACAAATCACCCTATGAGCTTAGGCCTATCTCATCATCAGCAACTTGGTTCTTCAATGTCCCACCATCTTCATCATCCTCAAAACCTCCACGCTTCTTCTGCAACAACAAACCCTAATTCCAGTCTCCTGCGTCTAGGCAATGCCAATAATAATGGAGCAAAATTTGAGCCTTCCAGCTTGATCTCACCATCATCATCAAACCCATCAATGCCTAATCATTCCTCAGATTTCTTCATGACAGATCCGATCCCTAACCAAGGATTTCATCAGCACCAGCAAGCAGCGGCATTTTCGGCTTCAAGCAAGGCTTCGTCTTTACATGGTCTCATGCAGCTTCCTGATCTCCATGGAAACCCTAGTAATAATCTAGGGTTCTTCGCTAATAACAGCATGATCACTGATCAGTTCAATAACGTCCCTATTGGTGATCATCAGCCTGGTTTGCTCTTCAGTAACTCCATGCAACACGCTGATGACGTCTCTCCTGCGGCCGCGCATATGTCTGCTACTGCATTGCTTCAGAAAGCTGCTCAGATAGGCTCAACCACGACCACGTCGAATAATAGTTCTTCCTCGTTACTCAGAGGAATGGGTGGTCGTTCATCACCAAACAATAATAATGGCGCTAAATCCGATAATCTTGTCGCTTTTGGGAGTGACAGTACAGAAAACGACCGCCACCACCATCATATTCGAGGGTTGATGAATTCTCTTGTTAATGGGAATGCTTCGATATTTGGAAATGTGCAAGCAGGGAACGATCATCATCATCATCATCGGGCTAATAGTCTGCAACAGAATCTGGGAACTGTGAGCTTCGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGCATGGTGAGAAACATGAATGGTGGATTTTCACAGAGAGAACAACCTCAACAACAACAACAGCCGCAACATGGAAGCATCAACATGAGCTCTTTGGAACCTGAACAACAGGCAAGCCAAACTTTCAGAAGCACGACGCTGCAATGA	1824	0.4611	MGIREGEMIRGLATWLVAPNFPNPSSSILLCSQWLAYSVRLTFHNNMSAASSSSPFFGIREENPTHQVTQQQHQQQHHQSSTAVSSTAPDTVVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVRNPTCLNSMATHLYGTNHPMSLGLSHHQQLGSSMSHHLHHPQNLHASSATTNPNSSLLRLGNANNNGAKFEPSSLISPSSSNPSMPNHSSDFFMTDPIPNQGFHQHQQAAAFSASSKASSLHGLMQLPDLHGNPSNNLGFFANNSMITDQFNNVPIGDHQPGLLFSNSMQHADDVSPAAAHMSATALLQKAAQIGSTTTTSNNSSSSLLRGMGGRSSPNNNNGAKSDNLVAFGSDSTENDRHHHHIRGLMNSLVNGNASIFGNVQAGNDHHHHHRANSLQQNLGTVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREQPQQQQQPQHGSINMSSLEPEQQASQTFRSTTLQ	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	452	499	-	-
	Lele49g1624	607	SUPERFAMILY	beta-beta-alpha zinc fingers	124	221	IPR036236	-
	Lele49g1624	607	Pfam	Zinc-finger double-stranded RNA-binding	125	147	IPR022755	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	452	492	-	-
	Lele49g1624	607	Gene3D	Classic Zinc Finger	104	173	-	-
	Lele49g1624	607	SMART	c2h2final6	201	221	IPR013087	-
	Lele49g1624	607	SMART	c2h2final6	166	196	IPR013087	-
	Lele49g1624	607	SMART	c2h2final6	125	147	IPR013087	-
	Lele49g1624	607	FunFam	protein indeterminate-domain 12-like	104	172	-	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	566	607	-	-
	Lele49g1624	607	ProSiteProfiles	Zinc finger C2H2 type domain profile.	125	147	IPR013087	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	65	110	-	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	567	607	-	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	288	346	-	-
	Lele49g1624	607	MobiDBLite	consensus disorder prediction	65	102	-	-
	Lele49g1624	607	FunFam	protein indeterminate-domain 5, chloroplastic-like	179	258	-	-
	Lele49g1624	607	ProSitePatterns	Zinc finger C2H2 type domain signature.	127	147	IPR013087	-
	Lele49g1624	607	Gene3D	Classic Zinc Finger	179	258	-	-
	Lele49g1624	607	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	67	580	IPR031140	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g1624	Lele-ChrLele49	18289590	18294723	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g1624	120	566	C2H2 Transcription Factor Family	AT2G02080	48.447	1.38e-118	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele49g1624		zf-C2H2_jaz	3.7e-05	CL0361