Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1607 ATGGAGGCGGGTGGAAAACTCTTTGGGGCACCCAACATGACGACACGCTTGCTTCAAAACGAAAGAATTCCTCCTTCTTCTGATGTTCTCGACTCTCTCTGGGCTCACACCTCAAACCCAGCTTTCCCAGGATCAAAATCGATGGTGAATTTTGATAGACTGAGTGGATGCAGAGTGACAGACCGGCCATTTCTGCGAGGATTGGATAAAGAAGAGACAGGGGAAGAAGATTACGAGATGTGCTTTCATCAAGCTGGGAAGAAGAGGAGGCTCACAAGTGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAACCAGAGAGGAAGGTTCAGCTAGCAAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAGAACAGAAGAGCCAGGTTCAAGACGAAACAGCTTGAGCAAGACTATGGCAAATTAAAAGCTGGCTATGATAAACTCAAGAGTGATCATGACAATCTTATCAAGGAGAACGACAAGTTAAAAGAAGAGGTTAAATCCCTAAAAAACAGATTGAATGTGAGAGAGAGAGAGAGAGAAGATTCTCGTAAGTCAAAGGCGAATGCAGATCCTGGAGATTCAGAAGCAGTGAATTCGGCAGAAGGAAAGCCACAGGAAGATGGAATCAAAGACGACGGAATAACGGCGAAGGGAATAACGGTGTGGAATAAGCAGCAGGAAGACGCGAATTCATCAGTGAAAAGCGACGTGGTGGATTCGGAGGACACGGAGGCGAACCACCGTTCGTGGATGCAACAAGAGCCGGCGGATTCGTCGCCGGCTGCGGAAGGTGAAGCTGCGGAACACTCGGATTTCTCGCAGGACGAAGAAGACGATAACCTAATGAGGAGCAACCTGCTGAATCTGGCGTGCTTCCCAAAGGTTGAAGAAGATGGATGCTACGATGATCCTCCTGAAGGTTGTTGTAACAATTTTGGATTCGCTGCTGAAGATCAAACCTTCTGTTTTTGGCCTTACTGA 1014 0.4763 MEAGGKLFGAPNMTTRLLQNERIPPSSDVLDSLWAHTSNPAFPGSKSMVNFDRLSGCRVTDRPFLRGLDKEETGEEDYEMCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKAGYDKLKSDHDNLIKENDKLKEEVKSLKNRLNVREREREDSRKSKANADPGDSEAVNSAEGKPQEDGIKDDGITAKGITVWNKQQEDANSSVKSDVVDSEDTEANHRSWMQQEPADSSPAAEGEAAEHSDFSQDEEDDNLMRSNLLNLACFPKVEEDGCYDDPPEGCCNNFGFAAEDQTFCFWPY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1607 337 MobiDBLite consensus disorder prediction 183 289 - -
Lele49g1607 337 MobiDBLite consensus disorder prediction 245 259 - -
Lele49g1607 337 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Lele49g1607 337 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Lele49g1607 337 MobiDBLite consensus disorder prediction 183 201 - -
Lele49g1607 337 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Lele49g1607 337 CDD homeodomain 87 143 IPR001356 GO:0003677
Lele49g1607 337 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Lele49g1607 337 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Lele49g1607 337 Coils Coil 155 196 - -
Lele49g1607 337 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Lele49g1607 337 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Lele49g1607 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 258 IPR045224 GO:0003700
Lele49g1607 337 Gene3D - 81 148 - -
Lele49g1607 337 SMART HOX_1 85 146 IPR001356 GO:0003677
Lele49g1607 337 MobiDBLite consensus disorder prediction 230 244 - -
Lele49g1607 337 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1607 Lele-ChrLele49 17858131 17859864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1607 44 203 Homeobox Transcription Factor Family AT3G01470 51.250 1.78e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele49g1607 Homeodomain 2.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1607 49 17858131 17859864 Lele51g1606 51 16842661 16844406 hybridization
Lele49g1607 49 17858131 17859864 Lele52g1235 52 9376843 9378733 hybridization