Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1578 ATGGAAGAGAGAAGTGATTCTGAGAAGGTTGATGAAGTCATGCTTCCAGGGTTCAGATTTCACCCAACTGATGAAGAGCTTGTTGGGTTCTATCTCAAGAGAAAGATTCAGCAGAGGCCTCTCTCTATAGAGCTCATAAAGCAGCTTGATATCTATAAATATGACCCCTGGGATCTGCCAAAGTTGGCAAGTACAGGAGAAAAAGAGTGGTATTTTTACTGTCCTAGGGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACAGGGGCTGGGTTTTGGAAAGCCACAGGCACTGATAGGCCCATATATTCCTCTGAGGGTTCAAAGTGCATTGGGTTGAAGAAATCTCTTGTCTTCTACAAAGGAAGAGCTGCAAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGATTACCTTCTCTCTCTGACTCTTCTTCCTCTTCACCAAAGAAGTTCACAGAGAGAACCATCCCTGCTAATGATTCGTGGGCAATTTGTAGAATATTCAAGAAAACAAACTCCACAGCCCAAAGAGCTCTCTCTCATTCCTGGGTCTCTCCCTTACCTCATGAAATGAACACCTCTGAGATACTAACCAAAGACGGAGACACTTCCAAGTTTTGTTCAGATCATTATAACATTATTTCGTCATTGACAAAGAAAACTAGCTTACCCAACCAGTTCTGCACCAACCAAAACGACCCCTTAACCTCCACCACTACCACTAGTAGTAGTGTTCATTTCCCTTTAGATATTGCCTCTTACAAACCCGTCATTAACCCATTATTGGTTTACAAAACCTTTGACCAATTACCCATCATTTCATCAAATAACTCAGACTTCATGTTTTCATCATCATCACCTCTTGAACCATGCAGTGTTAAAGCCACCACCACCATGGACATTTCCTCCATGTTACTGAGCATGTCGTCATCATCTTCTTCTGTGCTTGGAGACTTTTGCAGTAAGGCTGCTTCATCAGAGGTTGCAAATTTTGGAGGGTTTCAAGAACAATACAGCACTAATGATAATACTGGGTATTCACCAGTAATCCAAGATGGGAATGGATTGGTGAAGATGATGATGAATCATCCTAATAATACTAATCTGAATGCGAATGTGGTGATACCTAGAGTGATGGAGGAGCCAGATCAGACGAATATGCATGAAGCATGGAAGTCAAATCTGCTTTGGGATAGTTCATCTTGTCCCTGTGATCACGTGCCCTCTACTAATTATTCTACTACTACCAAGTGCTATACTTAG 1275 0.4173 MEERSDSEKVDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLSDSSSSSPKKFTERTIPANDSWAICRIFKKTNSTAQRALSHSWVSPLPHEMNTSEILTKDGDTSKFCSDHYNIISSLTKKTSLPNQFCTNQNDPLTSTTTTSSSVHFPLDIASYKPVINPLLVYKTFDQLPIISSNNSDFMFSSSSPLEPCSVKATTTMDISSMLLSMSSSSSSVLGDFCSKAASSEVANFGGFQEQYSTNDNTGYSPVIQDGNGLVKMMMNHPNNTNLNANVVIPRVMEEPDQTNMHEAWKSNLLWDSSSCPCDHVPSTNYSTTTKCYT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1578 424 FunFam NAC domain-containing protein 35 23 177 - -
Lele49g1578 424 SUPERFAMILY NAC domain 12 174 IPR036093 GO:0003677|GO:0006355
Lele49g1578 424 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Lele49g1578 424 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Lele49g1578 424 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Lele49g1578 424 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1578 Lele-ChrLele49 16751842 16753498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1578 8 364 NAC Transcription Factor Family AT1G26870 53.639 5.86e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele49g1578 NAM 5e-37 No_clan