Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1574 ATGTTGTCGCCGTCGTCGTCGAAGGTTAAGGATCCCTACATCAAGCTCTTTGGGACGATGATTTTGATGCCGCTTCAATGCTCTGTTTGCACTACTCACTCTTCTGGACCTGTTCCTCCTTCATCTTCTTCCTCTCCAGATACCTCTGCGAGGGATCAGGATTCATCGAAGATAGAACTCATCACCCCAGAGCAAGATGATGGTGCTTCACATCAAACCACAGAGGATCCGAAATCTCCCACATCTTCAGGAGTTTGTGAGAACCCTAAGACCCTCTCACATTCAACTAAAAGAGAGAATTCTGTACTTAACTCATCTAAAACTGGAGAGGAAAGTGAGACAAGCACACAGCAGGAAAAGACTCCCAAGAAGCCTGACAAGATAATTCCGTGCCCTCGATGCAATAGCAAGGACACCAAATTCTGTTATTTTAACAATTATAATGTCAATCAACCTCGTCACTTCTGTAAGAACTGCCAGAGATACTGGACTGCTGGAGGAACGATGAGAAATATGCCTGTTGGAGCTGGTCGCCGCAAGAACAAGAGCTATTGTGCTTCTAATTATCGACACATAGTGATTCCTGAGTCACTTATAACAGCAGCCAATGCAAATGGGTTACAAAACACTGCCTTGAGAAATGGAGAGACGGTCTTGACCTTTGGCTCAGATTCTGCCATATGTGATTCCATGGCTTCTGTTTTGAACCTTGCAGAGAAAACCCAGAATGGTGTTTTGAATGGAGTTCATATACCCCAGCAGAATATTACTGTCCCTTGTGGTAGAGCAGATAATGGTGATGACCATTCAGTTGGAGCTTCTGTCACAACTTCAACTTCATCAGAAAAGAAAGCCAACGCTGGTTCCCAAGAATCTGTGAATAAAACCTATGAAGGTTTCCCTCCTCAATTACAATGCATTCAAGGTTCTCCATGGCACTATCCATGGAATTCTCTTGTGCCTCCTCCTGCTTTATCACTGGGTCATACGGTGTCTTTCTATCCCCCACCTGCATATTGGGGTTGTGCATTACCAGCCTCCTTGAACGTAGCATGTGTTTCTCCACAATCTTCTCTGCACAACCCTTCCCCTAGGTCCATCTCCAATTCGCCCACCTCGAGGAAACACTTGAGGGATGGAAGAATCATCACTCAAGCCAACTCTCATAAAGAAAAGCCTGATGCAGAGAGTAAGGACTCAGAAAATGGTGTCATGATCCCCAAGCCACTAAGAATTGATGATCCCACTGCGGCTGCAAAGAGTTCTATACGGTCAACACTAGGGATTAAGAATGGAAAGGCTAATCCCTTCAATGGTTGTGTAGGCCTCTTCAAGGAAATTCCATCTAAGGAAGATGACCAGAATCATCATCATCACATGGTTGAGGTATTGCCCATGCTATATGTGAACCCGGCAGCCTTATCACGGTCGGTTGCTTTCCACGAGCAGCAGGCCTAA 1458 0.4534 MLSPSSSKVKDPYIKLFGTMILMPLQCSVCTTHSSGPVPPSSSSSPDTSARDQDSSKIELITPEQDDGASHQTTEDPKSPTSSGVCENPKTLSHSTKRENSVLNSSKTGEESETSTQQEKTPKKPDKIIPCPRCNSKDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNMPVGAGRRKNKSYCASNYRHIVIPESLITAANANGLQNTALRNGETVLTFGSDSAICDSMASVLNLAEKTQNGVLNGVHIPQQNITVPCGRADNGDDHSVGASVTTSTSSEKKANAGSQESVNKTYEGFPPQLQCIQGSPWHYPWNSLVPPPALSLGHTVSFYPPPAYWGCALPASLNVACVSPQSSLHNPSPRSISNSPTSRKHLRDGRIITQANSHKEKPDAESKDSENGVMIPKPLRIDDPTAAAKSSIRSTLGIKNGKANPFNGCVGLFKEIPSKEDDQNHHHHMVEVLPMLYVNPAALSRSVAFHEQQA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1574 485 MobiDBLite consensus disorder prediction 355 409 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 31 51 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 372 401 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 270 295 - -
Lele49g1574 485 ProSiteProfiles Zinc finger Dof-type profile. 129 183 IPR003851 GO:0003677|GO:0006355
Lele49g1574 485 MobiDBLite consensus disorder prediction 355 371 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 31 129 - -
Lele49g1574 485 Pfam Dof domain, zinc finger 127 183 IPR003851 GO:0003677|GO:0006355
Lele49g1574 485 PANTHER CYCLIC DOF FACTOR 2 9 483 IPR045174 GO:0003700|GO:0006355
Lele49g1574 485 MobiDBLite consensus disorder prediction 113 129 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 74 112 - -
Lele49g1574 485 MobiDBLite consensus disorder prediction 260 295 - -
Lele49g1574 485 ProSitePatterns Zinc finger Dof-type signature. 131 167 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1574 Lele-ChrLele49 16594546 16596920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1574 8 483 C2C2-Dof Transcription Factor Family AT3G47500 40.000 1.74e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele49g1574 zf-Dof 1.4e-30 No_clan