LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g1556	ATGCATGATACCTGTTGACACTATATCAATAAGATGGCTTTCTTCCCTGCAAATTTCATGCTTCAAACTTCTCACCCAGAAGATCATCATCATCCCCCTTCTCTCAACTCTCTTCTGACTTCATGTGCTCCACAAGATTATCATCACCATGGGGCCCCTTCGTTTCCAGGTAAGAGATGCATGTCATTTTCAGGAATTGAACTGGGGGGTGAAGAAGCTAATAATAATAATGTAGGTGAGGAAGATTTGTCTGATGATGGGTCTCAGCCGGGGGAGAAGAAGAGGAGGCTTAACATGGAACAAGTTAAGACACTTGAGAAGAGCTTCGAGCTGGGAAATAAGCTTGAACCAGAGAGAAAAATGCAGCTTGCAAGGGCTCTAGGGTTGCAGCCCAGACAAATTGCAATATGGTTCCAGAACAGAAGAGCAAGGTGGAAGACAAAGCAGCTCGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTCTCAAAGCTGATAATGATGCTCTTCAAGCTCACAACCAAAAACTCCAAGCTGAGATATTTGCATTGAAGAACAGAGAGCCAACTGAGTCAATAAACCTAAACAAAGAAACAGAGGGATCTTCCAGCAACAGAAGTGAGAACAGCTCAGAGATTAAGTTTGATATAACAAGAACACCAGCTATTGAAGATAGTCCTGATCTATCAACACAACAAACCAGTGGCATAACCTTATTATTTCCGAAATCTTCTTCTGCTTCTGTTAGGCCTACTCCTCCTCCTCCCTCTTCAGGAGGAGTGGCTCAGCAGCTCTTTCAAGCTTCTTCAAGACCAGAGCTTCATCAGTGCCAGCAGAATAAGGTAGATAATCAGATGGTCAAAGAAGAGAATAATAATAATAATAATAATAATAATCATTTGAGCAATATGTTTTGTGGGATCGATGATCAATCAGGGTTCTGGCCATGGTTGGAGCACCAACATTTCAATTGA	978	0.4151	MHDTCXHYINKMAFFPANFMLQTSHPEDHHHPPSLNSLLTSCAPQDYHHHGAPSFPGKRCMSFSGIELGGEEANNNNVGEEDLSDDGSQPGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSLKADNDALQAHNQKLQAEIFALKNREPTESINLNKETEGSSSNRSENSSEIKFDITRTPAIEDSPDLSTQQTSGITLLFPKSSSASVRPTPPPPSSGGVAQQLFQASSRPELHQCQQNKVDNQMVKEENNNNNNNNNHLSNMFCGIDDQSGFWPWLEHQHFN	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g1556	325	Pfam	Homeodomain	93	146	IPR001356	GO:0003677
	Lele49g1556	325	Gene3D	-	85	154	-	-
	Lele49g1556	325	MobiDBLite	consensus disorder prediction	193	232	-	-
	Lele49g1556	325	SUPERFAMILY	Homeodomain-like	85	150	IPR009057	-
	Lele49g1556	325	MobiDBLite	consensus disorder prediction	196	217	-	-
	Lele49g1556	325	Pfam	Homeobox associated leucine zipper	148	188	IPR003106	GO:0006355\|GO:0043565
	Lele49g1556	325	Coils	Coil	140	188	-	-
	Lele49g1556	325	MobiDBLite	consensus disorder prediction	244	263	-	-
	Lele49g1556	325	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	81	233	IPR045224	GO:0003700
	Lele49g1556	325	MobiDBLite	consensus disorder prediction	68	98	-	-
	Lele49g1556	325	ProSiteProfiles	'Homeobox' domain profile.	88	148	IPR001356	GO:0003677
	Lele49g1556	325	ProSitePatterns	'Homeobox' domain signature.	123	146	IPR017970	GO:0000981\|GO:0006355
	Lele49g1556	325	CDD	homeodomain	93	149	IPR001356	GO:0003677
	Lele49g1556	325	FunFam	Homeobox-leucine zipper protein ATHB-13	85	152	-	-
	Lele49g1556	325	PRINTS	Lambda-repressor HTH signature	128	144	IPR000047	GO:0003677
	Lele49g1556	325	PRINTS	Lambda-repressor HTH signature	119	128	IPR000047	GO:0003677
	Lele49g1556	325	SMART	HOX_1	91	152	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g1556	Lele-ChrLele49	13511389	13515279	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g1556	10	325	Homeobox Transcription Factor Family	AT1G69780	60.062	6.76e-115	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele49g1556		Homeodomain	1.8e-15	CL0123