Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1548 ATGCAAAAAGAATTTGTTAAACGTTCTGGTTCTGCTAGTGGGAACAACCTTTTCCTCTTGGAAAATCCTCAAAGCTTTCTCAATTGGTTTTGTAGCTCAAAGCAATTTCTACGCTGCGAGAGGTGCAGTGTTAAAGGGAAGGTAAGAGAGATGGATTTGGACCAGTGGATCACGAAGGTGAAGGAAGGGCAGCATCTTCTGGAAGACGAGCTTCAGCTTCTTTGCGAATATGTGAAAGAGATTCTCATTGAGGAGTCCAATGTGCAGCCTGTTAATAGCCCGGTAACTGTTTGTGGTGATATTCATGGCCAATTTCATGATCTGATGAAACTTTTTCAGACAGGGGGTCATGTACCTGAGACAAATTATATCTTTATGGGAGACTTCGTTGATAGAGGGTACAATAGTCTGGAAGTTTTCACCATCCTTTTACTTCTTAAAGCTAGATACCCAGCTAATATTACCCTTTTACGAGGAAACCATGAAAGTAGGCAACTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGAAATGCTAATGCTTGGCGGTATTGTACAGATGTTTTTGACTACCTAACGCTTTCAGCAATAATAGATGGAACTGTGCTTTGTGTTCATGGCGGTCTTTCTCCAGATATTCGAACAATTGATCAGATTAGGGTTATTGATCGAAATTGTGAAATTCCACATGAGGGACCCTTTTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAGACATGGGCAGTCAGTCCCCGCGGTGCAGGTTGGCTTTTTGGATCTAGGGTCACTTCTGAGTTCAATCACATAAATACTCTTGATCTTGTTTGTCGAGCTCATCAACTAGTGCAAGAAGGCCTCAAGTATATGTTTCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTATTGTTACCGGTGTGGAAATGTTGCTTCTATTTTGAGCTTCAATGAAAATATGGAGAGAGAAGTTAAATTTTTCACTGAAACTGAGGAGAACAATCAGATGAGGGGGCCCAGGACAGGCGTTCCATATTTCTTGTAA 1062 0.4115 MQKEFVKRSGSASGNNLFLLENPQSFLNWFCSSKQFLRCERCSVKGKVREMDLDQWITKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINTLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1548 353 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 51 353 - -
Lele49g1548 353 SUPERFAMILY Metallo-dependent phosphatases 50 336 IPR029052 -
Lele49g1548 353 Gene3D - 43 353 IPR029052 -
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 299 315 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 156 180 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 276 296 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 220 247 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 94 121 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 123 150 IPR006186 GO:0016787
Lele49g1548 353 PRINTS Serine/threonine phosphatase family signature 191 217 IPR006186 GO:0016787
Lele49g1548 353 SMART pp2a_7 66 337 IPR006186 GO:0016787
Lele49g1548 353 CDD MPP_PP2A_PP4_PP6 52 335 - -
Lele49g1548 353 ProSitePatterns Serine/threonine specific protein phosphatases signature. 157 162 IPR006186 GO:0016787
Lele49g1548 353 FunFam Serine/threonine-protein phosphatase 51 353 - -
Lele49g1548 353 Pfam Calcineurin-like phosphoesterase 94 285 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1548 Lele-ChrLele49 13117769 13132942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1548 93 271 Calmodulin-binding Proteins AT5G63870 37.500 8.02e-29 111