Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1535 ATGGTGGGCCTGCCTAATATCTGTAGGGAATCAAGCTCAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGCAGGACAGCACAACAACTCCAACTTTTAAAAGAGAACTATATAGCTCCCACATATATATTGATTCACATACCTAAAAGGATCAGAACTCATTTTTATGTAATCTCTTCCAAAACTAGCAAAATGGATCTGCAAAATGTGCAAAACCAAAGAATGCATTTGGTTCTTTCCTCTGATGCCAAGCCAAGGCTTAAATGGAGTCCTGAGCTTCATCAACGATTCCTTGATGCTGTCAATCAGCTTGGAGGGTCTGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACCTTGTACCACCTGAAGAGCCATTTACAGAAATTCAGACTTGGGAAAAGCCCTCAACCAGAAGCTTTCTATGATGATGATAAACAAGAAGATTATAGAGAAGCCCAAAGCAGTGATAGTCATTGCAACAGGGAAACTGCTGTGGGGACCCAGAATCAGATCACTGAAAGCCAGCAGATTGCTCAAGCTCTCCAACTACAAATGGAAGTGCAGAGGAAGCTTTATGAACAAATTGAGGTTCAGAGACATTTGCAGCTTCGGATCGAAGCTCAAGGGAAGTACTTACAATCAGTGCTGTTAAAAGCTCAGCAAGCACTTGCAGGGTACAATCCTTCTGCTGCTGGAATAGAACATGCAAAAGCTGAGCTCTCTCAATTAGTCTCAATAATCAACAATGGCTGCCCAAGTTCGCCCATCTCAGAACTGACAGAAACTGGATTTTTGAGCTTGAAAAATGGAGGAGAGAGGAAGCAAAGCAGAGGGACTATGTGTTCATTGGAGAGTTCCTTGACATCTTCTGAAAGCTCAGGGACAAAGGAGGAAGAGGACCCTCATAACTCTGACAGAACTTCAGTTAAACTGCAGTTGATGACTGTTCACCATGAAGAAGATGATAAAGAATTGAATGGTGACTTAAAGAATCAAGCTTGTGAGAGAAAAAGGAGTGGAACCACTGATTCTGATGGTTACTGTGTAGAGCAACCAATCAGTAAAAGATGCAGCAACCGATCCAGGAAACCTGAGTCGACTGAATTGCTTGATTTGAACAGCCAGTATCACAGTGACACTGACTCAGACTAA 1170 0.4308 MVGLPNICRESSSEREREREGGSRTAQQLQLLKENYIAPTYILIHIPKRIRTHFYVISSKTSKMDLQNVQNQRMHLVLSSDAKPRLKWSPELHQRFLDAVNQLGGSEKATPKSLMRVMGIPGLTLYHLKSHLQKFRLGKSPQPEAFYDDDKQEDYREAQSSDSHCNRETAVGTQNQITESQQIAQALQLQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLLKAQQALAGYNPSAAGIEHAKAELSQLVSIINNGCPSSPISELTETGFLSLKNGGERKQSRGTMCSLESSLTSSESSGTKEEEDPHNSDRTSVKLQLMTVHHEEDDKELNGDLKNQACERKRSGTTDSDGYCVEQPISKRCSNRSRKPESTELLDLNSQYHSDTDSD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1535 389 Pfam MYB-CC type transfactor, LHEQLE motif 182 227 IPR025756 -
Lele49g1535 389 SUPERFAMILY Homeodomain-like 82 138 IPR009057 -
Lele49g1535 389 FunFam Myb family transcription factor 82 140 - -
Lele49g1535 389 MobiDBLite consensus disorder prediction 278 298 - -
Lele49g1535 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 56 329 IPR044848 GO:0003700
Lele49g1535 389 MobiDBLite consensus disorder prediction 275 389 - -
Lele49g1535 389 MobiDBLite consensus disorder prediction 299 349 - -
Lele49g1535 389 Coils Coil 184 204 - -
Lele49g1535 389 Gene3D - 82 140 - -
Lele49g1535 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 138 IPR006447 GO:0003677
Lele49g1535 389 MobiDBLite consensus disorder prediction 1 25 - -
Lele49g1535 389 Pfam Myb-like DNA-binding domain 85 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1535 Lele-ChrLele49 12549840 12551764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1535 73 362 G2-like Transcription Factor Family AT1G69580 52.632 8.03e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele49g1535 Myb_DNA-binding 8.5e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1535 49 12549840 12551764 Lele51g1531 51 13619370 13621893 hybridization