Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1521 ATGATCGTGGAAGAGACGAAGCCACAGAGAGCGATGGCCGAAGAAGGGTATATGCAACAGCTCAGATCTAAAGCCACCGAGCTTCTCCTGAGAGAAGAATGGAAGGAATCCATCGACGCCTATTCAAACTTCATCACTCTCTGCCAAAACCAAATCTTTGAAACTCCAAACCATTCTGACTCAGATCAGCTTCAAAGGCGGAGAAAATCCCTCTGCTTGGCCTTTTCAAACAGAGCCGAAGCAAGATCAAGATTGAAAGAGTTTCATTCTGCGTTGGAAGATTGTGATTTAGCTTTGGAAATCGATGGGACCCATTTGAAGACTCTGATCTGCAAAGGTAAGATTTTGCTGAATCTCAATAAGTATTCCATGGCTTTGGATTGTTTCAGAGTCGCTCTTCTTGATTCCCAGGCTAATGGGAACTCTGAAAACCTAAATGGGTATGTCGAGAAATGTCAAAAACTCGACTTTATCTCCAGAACTGGAAATCTGGACCTTTCCGATTGGGTTTCAAATGGATTACGAGGAAAGTCTCCAGAACTTGCAGAGTACATTGGTTCTGTGGAGATCATGGAATCTGAGATCAGTGGACGAGGGTTGTTTGCAACTAAGAACATTGATGCAGGGGGATTAGTTTTGATCACAAAGGCAATAGCAATGGAAAGAAGTGTATTGGGAGGGAAAGATCTGAGTGAGGAAGCTCAATTAGTGATGTGGAAGAATTTCATCGATACAGTTGCAGACTTTGTTAGAAAATGTCACAGAACAAGCAATTTGATCAGCAAATTGTCAAGTGGGGAAGATGAAGATTCACTTGAGGTTCCTGATATAGCTCTGTTTAAACCAGGAACAGAGGCGAAGAACAAGAACAATCAAGCCCGTGAGAGTGAGAAGATTGATATGGGTAAGTTACTAGCCATATTGGATGTGAATTCTCTAACTGAAGATGCAGTTTCAGCCAATGTATTAGGGAAGAAGAAGAACAATGATTATTATGGTGTTGGACTATGGCTATTACCTTCGTTCATCAACCATTCATGCTGCCCAAATGCAAGGAGATTGCATGTAGGAGACTATCTAATACTTCATGCTTCTAAAGATATCAAAGCAGGTGAAGAAATTCTCTTTGCCTATATGGATCCACTTTCTTCATTGCAAAACCGCAAAGATATGTCGACAACATGGGGAATCCAATGTAAATGTAAGAGATGCAAATTTGAGTCAGAAATCATGAGCAAACAAGAGATGAGAGAGATTGAGATTGGTCTCGAAAGAGGGATGGATGTGGGAAGTGCAGTGTACAAATTAGAAGAAGAAATGAAGAGATTGAAAGTGAGAGGGAAAGAGAGAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCTGAGGTTTATAGGTCTGATAGGTTCTTGAAGAGGTGGGGAAGGCGGATTCCGGCCATGGAAGCCGTCGTTTATAGCATCATCGATGTTATTGGAGGAGATGAGAGGCTGCTAAAGATTCAAATGGAGGAGTTGAAGAAAAATGGAGGTGGTAGACTTGTGGAGATGGAGAAAGTTTTGAAGCTGGCAAGAGAAGTTTATGGGAAGGTGGTGAAGAAGCAGGCCATGAGGACTCTTATTGAGCTTTGTGTTGCAACTAATGAATGA 1650 0.4182 MIVEETKPQRAMAEEGYMQQLRSKATELLLREEWKESIDAYSNFITLCQNQIFETPNHSDSDQLQRRRKSLCLAFSNRAEARSRLKEFHSALEDCDLALEIDGTHLKTLICKGKILLNLNKYSMALDCFRVALLDSQANGNSENLNGYVEKCQKLDFISRTGNLDLSDWVSNGLRGKSPELAEYIGSVEIMESEISGRGLFATKNIDAGGLVLITKAIAMERSVLGGKDLSEEAQLVMWKNFIDTVADFVRKCHRTSNLISKLSSGEDEDSLEVPDIALFKPGTEAKNKNNQARESEKIDMGKLLAILDVNSLTEDAVSANVLGKKKNNDYYGVGLWLLPSFINHSCCPNARRLHVGDYLILHASKDIKAGEEILFAYMDPLSSLQNRKDMSTTWGIQCKCKRCKFESEIMSKQEMREIEIGLERGMDVGSAVYKLEEEMKRLKVRGKERAYLRASFWSAYSEVYRSDRFLKRWGRRIPAMEAVVYSIIDVIGGDERLLKIQMEELKKNGGGRLVEMEKVLKLAREVYGKVVKKQAMRTLIELCVATNE 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1521 549 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 14 543 - -
Lele49g1521 549 CDD SET_SMYD 317 404 - -
Lele49g1521 549 Pfam SET domain 197 378 IPR001214 GO:0005515
Lele49g1521 549 ProSiteProfiles SET domain profile. 186 379 IPR001214 GO:0005515
Lele49g1521 549 SUPERFAMILY TPR-like 19 135 IPR011990 GO:0005515
Lele49g1521 549 Gene3D Tetratricopeptide repeat domain 17 156 IPR011990 GO:0005515
Lele49g1521 549 SMART set_7 186 385 IPR001214 GO:0005515
Lele49g1521 549 SUPERFAMILY SET domain 187 405 IPR046341 -
Lele49g1521 549 Gene3D SET domain 283 409 IPR046341 -
Lele49g1521 549 SMART tpr_5 106 139 IPR019734 GO:0005515
Lele49g1521 549 SMART tpr_5 18 51 IPR019734 GO:0005515
Lele49g1521 549 SMART tpr_5 72 105 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1521 Lele-ChrLele49 11779972 11781621 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele49g1521 SET 8.7e-14 No_clan