LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g1504	ATGGTGAAACTGAGGAAACAGTACAGTGAAGAAGAAATGAAACACAAGAGTAGTACTGAAGGAGAGATCGAATGGCAAGAAGCAGCGGCCATGGCTGCGAGTCTTCTGAAAGCTCGAAGAACAGGAAGAAAGAGATTCATTGGGGTTCGTCAGAGACCTTCAGGAAGATGGGTGGCTGAAATCAAAGACACAATTCAGAACATAAGAGTTTGGTTAGGGACTTATGATTCTGCAGAAGAAGCTGCCCGAGCTTATGATGAAGCTGCTTGCTTGCTTCGTGGAGCCAACACTCGTAGAAACTTCTGGCCTTCTCCTCATCATCAGTATAATAATTCTACAGCAAATCATACTCCAGTTCTTCCCAGAAAGATTGCTAATCTCATCCTTCTTAGGCTCAAAGCTCGAAACCTTGCTTCTTGTAATAATTCTCCTGCAGTTCTCACTCATCATTTTCCCAGTAACCAGACACAAGAAAAAGGAGGAGGAGTAGAACCAGAAAAGACCCACCAGCTTGATTATTTTCTTGATCATGGTGGTGAATTTAAAGGAGAAGGGCTTTCCGGGGAAAGTGAAGGAAAATCAGAAGAAAATGACGAGATGGCTAATCTCATGCTTCTTAGGCTGAATGAAGATTGTGTCTCTAATGATTCTGAAGGATTCAGTCATTTTCCCAGAAACCAAACAGGTTTGCACAACTTTGTAGACGAGTCAGAAAATAGTTTTTTCAGACACCTAGTCAATGAAGTAGGGTTTAACGAAGAAAATTATGGGAAGAAATTGAAAATGAGTGAGGAAAACAATGAAACTGCTAGGAGGGAAAAAGAGAGTTTTGATGAGGAATCTGAAATGGGGTTTATGGATTTTCAGCTGTTGGATAACGTGGGATCATCGATTTGTGATTCTTCTTCTCCATTTGAGGTAGCAGAAGAGATGATGGGGCCAATAATGGATCATAAGCAAGAAGTATATGAAAATGATGATGATGAAGCATCAATTCTGAGAGAAAGTTTTAGGATGAAATATGAAAGAAAATTCTCAGCTTGTCTTTATACCTATGTTGGTGTTTCTGAGTGCTTGAGGCTGCAATTTGGAGCAGAGAATTTCTGA	1107	0.4038	MVKLRKQYSEEEMKHKSSTEGEIEWQEAAAMAASLLKARRTGRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGANTRRNFWPSPHHQYNNSTANHTPVLPRKIANLILLRLKARNLASCNNSPAVLTHHFPSNQTQEKGGGVEPEKTHQLDYFLDHGGEFKGEGLSGESEGKSEENDEMANLMLLRLNEDCVSNDSEGFSHFPRNQTGLHNFVDESENSFFRHLVNEVGFNEENYGKKLKMSEENNETARREKESFDEESEMGFMDFQLLDNVGSSICDSSSPFEVAEEMMGPIMDHKQEVYENDDDEASILRESFRMKYERKFSACLYTYVGVSECLRLQFGAENF	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g1504	368	Pfam	AP2 domain	45	94	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	CDD	AP2	44	101	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	12	319	-	-
	Lele49g1504	368	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele49g1504	368	FunFam	ethylene-responsive transcription factor RAP2-11	44	103	-	-
	Lele49g1504	368	PRINTS	Ethylene responsive element binding protein signature	68	84	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	PRINTS	Ethylene responsive element binding protein signature	46	57	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	SMART	rav1_2	45	108	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	SUPERFAMILY	DNA-binding domain	45	103	IPR016177	GO:0003677
	Lele49g1504	368	ProSiteProfiles	AP2/ERF domain profile.	45	102	IPR001471	GO:0003700\|GO:0006355
	Lele49g1504	368	Gene3D	AP2/ERF domain	44	102	IPR036955	GO:0003700\|GO:0006355
	Lele49g1504	368	Coils	Coil	253	280	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g1504	Lele-ChrLele49	11339070	11340176	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g1504	43	137	AP2-EREBP Transcription Factor Family	AT5G19790	60.000	3.43e-29	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele49g1504		AP2	1.2e-14	CL0081