Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1469 ATGGGTAGTGGTGCTGCCGACTGTTTGGCTGCTATGGCTTCAAGGGAGTTGGGACCGACAGGTCTGATTTTGGAATCACCACCTCCTCTAGCTCAGTTTATACTTCATGAAACACATGATGAAGATTTGACCAGCATGGACCAGATTCTTCAAGTGAATAGAACAATGGAGGAGACGACGAGGAAGTTCATTTGCAAGTTCTGCAACAGGAGGTTCCGATGTGGGAAGTCTCTGGGTGGTCACATTAGAACCCACATGAATCAACATTCAAGCAATAATAATAAGGCCATTGCTAAATCAGACAAGTTTGAAAGTAATGGTGTTGATGCTGCAACAAGAAAGAAGAGGAAGAAGAAGAGAGATTTAAGTTCATCAGATTATGGCCTCAGAGAGAATCCCAGAAAGACAAAGAGGTTTGTTCATCATCATCCCTTATTCACTTTACATCATAATAAGGAGAATTTCTGTAGAGAATGTGGGAAAGGATTTTCTTCTTTGAAAGCTTTATGTGGTCACATGGCTTGTCACTCTGAAAAAGATCAGAAGCAGAATTTTGCAATGATAGATTATGATGATAATGCTCAATCTGATAGTGAAACTTCAGATCCAGAGGATTTGAAGAGAACAAGGGTCATGACCCTTAATAATAACCCAACTTCTTCTTCTGTGTCAGAGGTTGAACAAGAAGAAGCAGTAGAAGAAGTGGCTATGTGCTTGATATTGTTGTCTAAGGGTTTTTATAGCCATAAAAAAGGTCGTTTTAGTTTGGACAAAGATTCTAATTCTGATAACTATTCTGCAGTTTTAGAGGCCAAATCAAACTCTGTTGATGGTCAGAATAAGATTAATAATAAGAACTCTGTTTATAATGCTTCTGAGCTTGTGAAGTTGGGAAAGGACAAGATGAAGTTGAAATTTTCAGATTCTGGGTATTCAAGATATAGTTCAAAAAATGAAGATCCAAGTGTTTCAGTTCATGGGGTTCTCAGAAATGGTGTTTTTAATCAACCAAAAGTGGAAGAACATGGGCATGGATTTAACGATTATGATGTCTTTGAACCAAGGAAGCTGATGATGAACAACAACAGATGCTACGGGAGCAAGAACAGTACTGAATCCAAAAAACTAGTAGTGTTGGGAAATTCAGACAAGTTTGATTCATTTAATGGTGCCAAACAAGAATATCTTGGTCACAATTTGGATGAAGTTTCCTTCTGCAAGAAGAAGAAGAAAACCAGTTTTCCTAATCATGACTCAGAAGAATCATATGCTAGTGCGGAGAAAATTACAGACAGTAGTACTGATTCTGATTCTTTTCCTTATTCTTATGAGAAGCCTAAGAGTAGTAATAAGGCCAAGATGAAGAAAGTGATCAAGATGAAGAAGAAGGCAAAGAAAACAAAGGAACATCAATGCCCAATCTGCCACAGAACTTTCAGATCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTGTAGGTGGATTTGAAGAGAACAACAACAACACTGAAGTAGTCAAACAAGAATCTCAATCTCCTTCTTCTCCTGCTGTTTTTGTTCCTTGCCTGGTCGATCTTAACCTACCTGCTCCTGTTGATGAATAA 1608 0.3856 MGSGAADCLAAMASRELGPTGLILESPPPLAQFILHETHDEDLTSMDQILQVNRTMEETTRKFICKFCNRRFRCGKSLGGHIRTHMNQHSSNNNKAIAKSDKFESNGVDAATRKKRKKKRDLSSSDYGLRENPRKTKRFVHHHPLFTLHHNKENFCRECGKGFSSLKALCGHMACHSEKDQKQNFAMIDYDDNAQSDSETSDPEDLKRTRVMTLNNNPTSSSVSEVEQEEAVEEVAMCLILLSKGFYSHKKGRFSLDKDSNSDNYSAVLEAKSNSVDGQNKINNKNSVYNASELVKLGKDKMKLKFSDSGYSRYSSKNEDPSVSVHGVLRNGVFNQPKVEEHGHGFNDYDVFEPRKLMMNNNRCYGSKNSTESKKLVVLGNSDKFDSFNGAKQEYLGHNLDEVSFCKKKKKTSFPNHDSEESYASAEKITDSSTDSDSFPYSYEKPKSSNKAKMKKVIKMKKKAKKTKEHQCPICHRTFRSGQALGGHKRSHFVGGFEENNNNTEVVKQESQSPSSPAVFVPCLVDLNLPAPVDE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1469 535 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Lele49g1469 535 MobiDBLite consensus disorder prediction 411 455 - -
Lele49g1469 535 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Lele49g1469 535 Gene3D Classic Zinc Finger 446 519 - -
Lele49g1469 535 Gene3D Classic Zinc Finger 38 126 - -
Lele49g1469 535 MobiDBLite consensus disorder prediction 426 445 - -
Lele49g1469 535 SMART c2h2final6 470 492 IPR013087 -
Lele49g1469 535 SMART c2h2final6 63 85 IPR013087 -
Lele49g1469 535 SMART c2h2final6 154 176 IPR013087 -
Lele49g1469 535 MobiDBLite consensus disorder prediction 411 425 - -
Lele49g1469 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Lele49g1469 535 MobiDBLite consensus disorder prediction 82 136 - -
Lele49g1469 535 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lele49g1469 535 Pfam C2H2-type zinc finger 63 86 - -
Lele49g1469 535 Pfam C2H2-type zinc finger 470 492 - -
Lele49g1469 535 Pfam C2H2-type zinc finger 156 178 - -
Lele49g1469 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 470 492 IPR013087 -
Lele49g1469 535 MobiDBLite consensus disorder prediction 83 100 - -
Lele49g1469 535 ProSitePatterns Zinc finger C2H2 type domain signature. 472 492 IPR013087 -
Lele49g1469 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Lele49g1469 535 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 56 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1469 Lele-ChrLele49 10794960 10799161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1469 61 535 C2H2 Transcription Factor Family AT1G26610 36.505 2.33e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g1469 zf-C2H2_6 7.2e-05 CL0361