Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1422 ATGGAATCTTGGAGTTATCTCTCAGAAGAGAAAGGCAATTTGATTTCTGATGAGATGGATTTTTCACTCGAAGCTTTTATGAGAGGCAAAAAGGGCAAAGATTCTTGTAACTTGGAGAGAGATGAATTTGGTTCTAGTGGTGGGGAAGCTAAAAGCATGGAAGTTTTTGACCTGGGACTTCATGACTTGTTTCAAAATGAGCTAGATAGAAATCATAGTAAAAGAGTGACTTCCTCTATCAATGTTATTGCCATGGATTCATCTTTTGCAGAATCTCAGCCAATGTTTTTAGGTTCTCTAGTTGAATCTAAAAGTCCCGATTCATCACTGATTGATTTGAAGCTTGGTAGAATAGCTGATTGTAAGGATGCAAATAGTGATAAAATTGCAAGGAAAGCTCGGTCTTCCGGCTCACCAACTCAGACGGTTTTTTGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAGGAGTACCACAAAAGGCATAGAGTTTGTGATGCTCACTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTATCCGAGTTCGATGATGGCAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATCAACGCAGAAGGAAGCCTCAGTCTGATTACTTATCTGGTAAACCCTACAAGATGCTCCAGTTACATCCAGGGACCAAATATCTGGAGGCTTCATTTCAGAAGAGACCCCAGTTTGCCTCACAAGACGTGATCAGTTGTGGCACTTTGTATGAACAAACCAATTTCAGCGTCACACGCAGTCAGGAGGAGTCGTCGACAGCCTCAAATGCGAGCTGTGCTCTCTCTCTTCTGTCAGTTCACTCGCAGAACTCGCCATGCCACCCGGCAGGAAACCCGGGACCTAGCTCCCATGCTTGTCGTGCTGATGAAAATGTTTCCAAGATACATTTGGGCAAAAACCCTGTGGACAAGCATGAGCAAAATGAGTCATCATCATCTCATGGATTGAGCTCCATGGAAGCTATCAAGAATAGATCCATATTGCTTTCTAATGCTGATTGCATCCGTGAAGATGGAGGAAACCATACTCGCATAATCACAGAGCTTGAGGAACTCAGTCACCATGACATCCGAAGTGATCCACAACCACCACCGCTTTCTCTACAAAGTCTATTGGATCTCCAATCCCTTCTCGATGAATCAGAACCCTTGGATCGCCTCTACGATGAGCTCTCATCCAATAGTCTCTCTCCGTCGCTGCTCATTCAGCCAATTGCCTCCGCAATGGACTCCGGCCCGTCAACGTCTCTATTGCAGCTTCCAAGGTGTACCTCTCCTTGCTTTTTGCTTGTGATGGATTGGATTCATTTGGATCGTTTTCCTGATATTCTGAAGTCTTTGGTTCAAACAATGGCCGATGTTCCAGTATTGGCTCTTGAATTATGTAGAAATGTGGGTCAATATAACCAATTGTCAAATACGTGCTTGCGAGTATTGAGGGAAGTTTTGAGGCCAGAACATGGAGACCCTGATAATACAGCAGTGGAGGCAAGAACATTTGCTTTAGGCTTCGTCACGAGCCAAATTATGAGCTTAACTAAAGTGTCTGGTGGAGGGAAAAAAGCGGCGATTAATTTTCCAAGGTATTTAACCCACAAGGCCGCGGATAAGTCAGAACCTCGAGCTTTGGCCGTGGAGTCCATCATGGAAATTGTAGGTGTCATGGCATTCGAGGACCAAATTGGATTTGTGAAATTCGTGGTGCAAATGGCTCATGGAAAACCAAATCTTAGGCTTTTGGCAGTTGATCTTATTTTGAATCTAGTGACATCATTGAAAGATCCATTGGGTGTGAATTCAGAAAATGAAATGACAGAACCCTGGGGAATGTGTTGCTTGGAGGAATTGGTGAAGCGCTGTTCAGATGTGGGTGCTGCAATACGTGCTCGGTCTTTGTCAAACTTAGCACAGTTGGTGGGGTTTCTTTCAAGTGATATGAAGTGTGCGGTGGTTTTGAACAATTTTATGGAATCTGTTACAGTTGTAGATAAAAATGTTGATGCTGGGATAAATAATATTCTGAGAAGGTGTGTAGATGATAAAGCAGCTGTTCGGAAGGCTGCTCTTCTTCTAGCTACCAAGTTAACTACTCTTCTCGGTGGTGCCATTGATGAAGTGGTGCTCAAGACAATGGGCATGGCTTGTTCGGATCCGCTTATTAGCATACGCAAAGCAGCAATTGGAGCTCTTTCAGAGGGGGGGGTGAAAGTCACCAATCTCTGGGCTGAAATGAGTACATCGCAAAGTGTGTTTTTTGGTAGACAGGAGCATGTCAATGAAAACAATTCTGGAAATATTGGTTAG 2382 0.4383 MESWSYLSEEKGNLISDEMDFSLEAFMRGKKGKDSCNLERDEFGSSGGEAKSMEVFDLGLHDLFQNELDRNHSKRVTSSINVIAMDSSFAESQPMFLGSLVESKSPDSSLIDLKLGRIADCKDANSDKIARKARSSGSPTQTVFCQVYGCNMDLSSSKEYHKRHRVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRRRLAGHNQRRRKPQSDYLSGKPYKMLQLHPGTKYLEASFQKRPQFASQDVISCGTLYEQTNFSVTRSQEESSTASNASCALSLLSVHSQNSPCHPAGNPGPSSHACRADENVSKIHLGKNPVDKHEQNESSSSHGLSSMEAIKNRSILLSNADCIREDGGNHTRIITELEELSHHDIRSDPQPPPLSLQSLLDLQSLLDESEPLDRLYDELSSNSLSPSLLIQPIASAMDSGPSTSLLQLPRCTSPCFLLVMDWIHLDRFPDILKSLVQTMADVPVLALELCRNVGQYNQLSNTCLRVLREVLRPEHGDPDNTAVEARTFALGFVTSQIMSLTKVSGGGKKAAINFPRYLTHKAADKSEPRALAVESIMEIVGVMAFEDQIGFVKFVVQMAHGKPNLRLLAVDLILNLVTSLKDPLGVNSENEMTEPWGMCCLEELVKRCSDVGAAIRARSLSNLAQLVGFLSSDMKCAVVLNNFMESVTVVDKNVDAGINNILRRCVDDKAAVRKAALLLATKLTTLLGGAIDEVVLKTMGMACSDPLISIRKAAIGALSEGGVKVTNLWAEMSTSQSVFFGRQEHVNENNSGNIG 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1422 793 SUPERFAMILY ARM repeat 551 757 IPR016024 -
Lele49g1422 793 SUPERFAMILY SBT domain 143 224 IPR036893 GO:0003677|GO:0005634
Lele49g1422 793 FunFam Squamosa promoter-binding-like protein 14 136 206 - -
Lele49g1422 793 Gene3D - 462 766 IPR011989 -
Lele49g1422 793 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 444 IPR044817 GO:0003677
Lele49g1422 793 Gene3D - 135 206 IPR036893 GO:0003677|GO:0005634
Lele49g1422 793 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677
Lele49g1422 793 Pfam SBP domain 145 218 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1422 Lele-ChrLele49 10327121 10339240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1422 111 244 SBP-box Gene Family AT1G69170 60.417 1.81e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele49g1422 SBP 4.1e-31 No_clan