Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1419 ATGTGTGTCAATATGGGTAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTGACATTTGCAAAGAGGAGGAATGGGCTTCTCAAGAAAGCTTATGAACTCTCCGTACTCTGCGATGCTGAAGTTGCTCTTATCATCTTCTCCAGCCGAGGCAAGCTCTATGAGTTCTGCAGCAACTCAAGCATGGCCAGCACAATTGAACGGTACCAAAGATGCAGCTATGGAGCCTTGGAAGCAGACCAACCTGCAATGGAGACACAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGCATACACAAAGAAATCTGCTTGGGGAAGAACTGGAGCAGTTGGGCATAAAGGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCACTGAAACAAATCAGGTCGAACAAGACTCAACATTTGCTTGATCAACTCACTGATTTGCAAAGGAAGGACGAGATGCTTCTGGAAACTAACCGTGTCTTGAGGTGCAAGTTGGACGAAATAAATATAAGCCTTCAACCATCATGGGAAGCAAGGGAGGGAAATGATTCATACAGCCGCCAGCCTCCACACTCGGAGGGATTCTTTGGGATTGCACAATGCAGTCGTACATTGAACATGGGCTTTGGTTCTGCAGAAGCAAATGAAGCTGCTGGAGCAGCAGCTGGAACCTCAGCCCAAAATGCTAGTGAATTTCTTCCAGGATGGATGGCATGA 747 0.4699 MCVNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSNSSMASTIERYQRCSYGALEADQPAMETQRCYQEYLKLKSKVEALQHTQRNLLGEELEQLGIKELEQLERQLDSSLKQIRSNKTQHLLDQLTDLQRKDEMLLETNRVLRCKLDEINISLQPSWEAREGNDSYSRQPPHSEGFFGIAQCSRTLNMGFGSAEANEAAGAAAGTSAQNASEFLPGWMA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1419 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele49g1419 248 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 Gene3D - 17 86 IPR036879 GO:0003677|GO:0046983
Lele49g1419 248 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 184 - -
Lele49g1419 248 FunFam MADS-box transcription factor 1 17 92 - -
Lele49g1419 248 CDD MADS_MEF2_like 6 82 IPR033896 GO:0000977|GO:0045944
Lele49g1419 248 SUPERFAMILY SRF-like 6 86 IPR036879 GO:0003677|GO:0046983
Lele49g1419 248 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lele49g1419 248 Pfam K-box region 90 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele49g1419 248 Coils Coil 125 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1419 Lele-ChrLele49 10272448 10279812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1419 5 247 MADS-box Gene Family AT5G15800 57.471 2.13e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele49g1419 K-box 1.3e-25 No_clan