LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g1418	ATGGGGAGAGGTAGGGTTCAGTTGAAGAAGATCGAGAACAAGATCAACAGGCAGGTTACGTTCTCAAAGAGAAGTCTTGGGATAATGAAGAAGGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGGTCGTCTTCAATCACAAAGGAAAGCTCTTTCAATATGCGACTGATTCTTGGTATATATGTGTGTGTGTGTGCGCTTGTTTGTTTGTGTTATGCTTGATCTATTTCTCCACTTTCTTCTTCTGA	258	0.4147	MGRGRVQLKKIENKINRQVTFSKRSLGIMKKAHEISVLCDAEVALVVFNHKGKLFQYATDSWYICVCVCACLFVLCLIYFSTFFF	85

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g1418	85	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	61	-	-
	Lele49g1418	85	SUPERFAMILY	SRF-like	2	62	IPR036879	GO:0003677\|GO:0046983
	Lele49g1418	85	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	CDD	MADS_MEF2_like	2	61	IPR033896	GO:0000977\|GO:0045944
	Lele49g1418	85	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lele49g1418	85	Gene3D	-	13	72	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g1418	Lele-ChrLele49	10264933	10265190	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g1418	1	61	MADS-box Gene Family	AT1G26310	77.049	4.54e-31	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lele49g1418		SRF-TF	2.4e-24	No_clan