Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1416 ATGGAGGTTAATCCACCAGAGACCTCTGCTCAACACCAACAGAGAAAGCCCAAGAGAAAACGAAGCCGGGAAGACCCAGAACTCGAACGGCTGAACTCATTGTCGTGGAACCCCTCTCTTTCTGAAAATGACGATACTTTTTCTTTTCTTACTGGCTCCAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTAGAAATCCCTGATCCCAAAGACGACAAGAGGAAGAAGTCTAAACTTAAAGCAGATTTGAAGAAACCGAAGCTAAGTGAAGTAGAGGGTGCCTGTAATGACGAGGTGAATTTTGAAGAAAACAAGGATGAGAGTGTGATGACTATAAAGAAGGAAAAGAAGAAGGAAAAGAAGGAAGCTGCTGATCAAGTTATTAATGTGAAGGATGATAATGATGAAGTGGACATTGATGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCATCTGCTCATGAAAGCAATTTACAAGCTTGGGTTCAAGGAGCCCACGCCAATACAGAAATCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTGCAAAGATGGTTGAACAAAGTGATGAAGAACCTGACAAATATGCTCCTACTGGCCCTCTAAGGGCTCTGATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGGGTGACTCCTATAGTTGGGGGTATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCCGAGATTATTGTTGGGACTCCAGGTAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAATTGAGTTGCATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAACACGACTGGTGGGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGGTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTTCTTCAACAAAACAAAATCAATCAGCATTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCTGCAGTGATTGATCTCACTAATCCAACAATATTGGCAGCCAAGCTTGAAGAGTCATTTATTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATAGACAAGGCCGAACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTTCGTATTCTTGGCACTAACGCTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGACCGGAGCAATCGAGGTTATCAAGATCGAAGTGTTATTTGGGATCAACCAATGTTACAAAGCAACTCTGCTAAAGAGGAAAGTTGCAGGTTCCACCCCAATGTGGGTAGGTGGTGTTTGCGAGTTTCCTTCCCTATGGGGGAAGTTGGTTGGTCGTGCTGGTTGTAATGCAACTTCTGGAGAGAAGGGAATATATGTGGAGAAATTGGCATTTGACAACGATGAAGAAAGATATGCCATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTTGCAGCGAGGGGTCTTGATATTCCTGACGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCGGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCATTAATCTCACCAAAAGATACATCAAAGTTTGCTTCGTTGTGCAAGTCCTTTTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTTAAGCGATTATCTATTGCCCGTCAAATAGACAAAGTAACACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGGAGTTAGTTGTGGAAAATTATGACAGTGAGGAGGACAGAGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAAGTTGCAGCAGGCGGGGATCACACCTCTGATGCAGGAACAGTTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGGAGGAGGAACCTGCAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTGCGGAATTCTGGTGAAGAGGTAGAATCTTCCACCATGTCTTGTGCGCATGGACGTCAAGGAAAACACTGGAAAGAGAATGGAGAATTTGAAACGAAAGAGAAAAGAGGAGAAAAAACGTAA 2493 0.4244 MEVNPPETSAQHQQRKPKRKRSREDPELERLNSLSWNPSLSENDDTFSFLTGSNELEGGFLSLEEIDEAEYGLEIPDPKDDKRKKSKLKADLKKPKLSEVEGACNDEVNFEENKDESVMTIKKEKKKEKKEAADQVINVKDDNDEVDIDEMEFYAWNELRLHHLLMKAIYKLGFKEPTPIQKSCIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQSDEEPDKYAPTGPLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLIELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTTGGDDPQSAQNCITISRYQRKKRQTLVFSATVALSADFRKKLKRSSTKQNQSALDGFNSIEALSERAGMRPNAAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHRQGRTIVFCTSIAALRHISSLLRILGTNAWTLHAQMQQRARLKTGAIEVIKIEVLFGINQCYKATLLKRKVAGSTPMWVGGVCEFPSLWGKLVGRAGCNATSGEKGIYVEKLAFDNDEERYAIDRFREDENGILVATDVAARGLDIPDVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKVTRKDSQEKAQKSWFERNAESVELVVENYDSEEDRVKKYRQMKASSTQLKKLQQAGITPLMQEQFQQLARQKQGSGGGTCKGKLVVIGQDCVEALQALRNSGEEVESSTMSCAHGRQGKHWKENGEFETKEKRGEKT 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1416 830 CDD SF2_C_DEAD 441 648 - -
Lele49g1416 830 CDD DEADc_DDX24 165 430 - -
Lele49g1416 830 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 440 679 IPR001650 -
Lele49g1416 830 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 403 IPR014001 -
Lele49g1416 830 Gene3D - 557 766 IPR027417 -
Lele49g1416 830 SMART helicmild6 547 639 IPR001650 -
Lele49g1416 830 MobiDBLite consensus disorder prediction 809 830 - -
Lele49g1416 830 PANTHER RNA HELICASE 122 730 - -
Lele49g1416 830 Coils Coil 122 142 - -
Lele49g1416 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 386 IPR027417 -
Lele49g1416 830 Coils Coil 214 234 - -
Lele49g1416 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 659 IPR027417 -
Lele49g1416 830 MobiDBLite consensus disorder prediction 796 830 - -
Lele49g1416 830 Pfam Helicase conserved C-terminal domain 580 638 IPR001650 -
Lele49g1416 830 MobiDBLite consensus disorder prediction 1 43 - -
Lele49g1416 830 Pfam DEAD/DEAH box helicase 178 386 IPR011545 GO:0003676|GO:0005524
Lele49g1416 830 Gene3D - 436 511 IPR027417 -
Lele49g1416 830 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 325 333 IPR000629 -
Lele49g1416 830 Gene3D - 112 403 IPR027417 -
Lele49g1416 830 SMART ultradead3 173 413 IPR014001 -
Lele49g1416 830 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1416 Lele-ChrLele49 10240555 10252204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1416 590 652 Eukaryotic Initiation Factors Gene Family AT3G13920 34.921 4.53e-08 54.3