Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1340 ATGCAGAGAACTGAGCCGGTGAAGTCAGATAACAGAGGGGCGCGAGTTTGTCTTCTGAATCTGTCTCTCCTGGGGTTTTACTTTTTCCTTATTGGAAATTGTAATTGGTTACCAAAAATGCTGGTTCGGAGGAGAATGATGAGTTGGAGGAGGGTGGCTAAATCTCTGAAAGTCTTTGCAGCTCATGGTTTACTCTTCTCCTTCACGCTACTGCTCGTTCTGAAGCTTGATCGTGTCGTTCATTACTCATGGTGGACCATATTCTCGCCTCTATGGCTTTTTCATTCTGTTGTAGCACGAGGAAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGCTCCTTGTCATGCCATTGTAGCAACACCTTTACTTGTTGCTTTTGAGCTGCTACTTTGTATACATCTTGAGATCAGTTATGTTGTAACTTTAAAGATTGTCTTCTTACCCTTATTGGCTTTTGAAGTGGCAATTTTGATCGATAATGTCAGGATGTGTAGGGCTTTAATGCCTGGAGATGATGAAAATATGAGTGATGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCTATATCCATGGTCTTCTTTATTGCTGCTTCAGTATTCACTCTTCTTAAGATATGTGGCGATGTTGCTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCAGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTACAACCCAACAATTCATGGAAAATGTCACTTTGACAAAGCAGATCCCAGCTCATCATCACTTTCATCCTCATTTACTATAAGATACCTCGACTGGGATAGAGGTTTGGTGGTTTCTGCGGATGAAGAGAGGCAGCAAAGTGGCTTATGCAGTCTGCAGGACATTGGTGGGCATATCATGAAAATTCCATTCATAGCTTTTCAAGTAATGCTATTTATGCATTTAGAGGGAACACCACCTGGTGCCAGAACTATGTCGTGTGCTGTTGTCTTTTCTCCCCTTTTTCTGTTGCAAGGAGCTGGGGTTTTATTTGCGGCTTATAGATTAGGGGAGAAAATAGTTCTCTTAGTTTACAGTGGAGATGTTCCTGAAAGATACTCGGATATAGCACTAAAATCCCGGGATTGTTTTGGATTCTTGCATCATGGCTCAAGGCTGCTGGGTTGGTGGTCAATAGATGAAGCAAGTCGAGAGGAACAAGCCAGACTTTATTGTGATGGGAATTCTTCTGGGTATAATACTTTCTCCCCTGACGAGGTGAAGAAAATGCCTAAAGCAGATCTTGTTGAGGAGATTTGGAAACTACAAGCTGCACTAGGTGAGCAATCAGAGATTACAACATTTAGCCAGGAGGAGTATGAAAGGCTCCAAATTGAAAGGATCCTATGTAGAGTTTGCTTTGAGGAGCAGATTAATGTGGTTCTGCTTCCGTGCAGGCATCACGTTCTTTGCAGTACATGTAGTGAGAAGTGTAAGAGGTGCCCTATCTGCCGTGTCCCTATTGAAGATCGAATGCCTGTATATGATGTATAG 1539 0.4288 MQRTEPVKSDNRGARVCLLNLSLLGFYFFLIGNCNWLPKMLVRRRMMSWRRVAKSLKVFAAHGLLFSFTLLLVLKLDRVVHYSWWTIFSPLWLFHSVVARGRFSLPAPSMPHDRHWAPCHAIVATPLLVAFELLLCIHLEISYVVTLKIVFLPLLAFEVAILIDNVRMCRALMPGDDENMSDEAIWETLPHFWVAISMVFFIAASVFTLLKICGDVAALGWWDLFINFGIAECFAFLVCTKWYNPTIHGKCHFDKADPSSSSLSSSFTIRYLDWDRGLVVSADEERQQSGLCSLQDIGGHIMKIPFIAFQVMLFMHLEGTPPGARTMSCAVVFSPLFLLQGAGVLFAAYRLGEKIVLLVYSGDVPERYSDIALKSRDCFGFLHHGSRLLGWWSIDEASREEQARLYCDGNSSGYNTFSPDEVKKMPKADLVEEIWKLQAALGEQSEITTFSQEEYERLQIERILCRVCFEEQINVVLLPCRHHVLCSTCSEKCKRCPICRVPIEDRMPVYDV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1340 512 ProSiteProfiles Zinc finger RING-type profile. 465 500 IPR001841 -
Lele49g1340 512 SUPERFAMILY RING/U-box 456 507 - -
Lele49g1340 512 FunFam Kinesin-like protein KIN-7D, mitochondrial 442 510 - -
Lele49g1340 512 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 47 512 - -
Lele49g1340 512 SMART ring_2 465 499 IPR001841 -
Lele49g1340 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 511 IPR013083 -
Lele49g1340 512 Pfam Zinc finger, C3HC4 type (RING finger) 464 505 - -
Lele49g1340 512 Pfam Transmembrane Fragile-X-F protein 74 339 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1340 Lele-ChrLele49 9270658 9280074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1340 47 512 C3H Transcription Factor Family AT1G73950 64.557 0.0 604