LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g1338	ATGGCCACTGTCGCTACAGCTCGAGGAATAGGCGTTGGAGCGACGAAGCTCCACCAAAGACCCCACCATGTTCACTCCAATCACAGCAATAAGTCTCTCTTTTTGGGTCAAAAGCTTCGATTTAAACCCTCTGTTGCAGAATCTCTATATGGTGGAAGAATCACTACCTTCTCGAACCCTAAATCGTTCGTGGCCTGCGCATTGGGAGGTGAATGGCTCGATTTGATTCGTCACCTGTTTGTGGGTGTTGGGGTTGGGCTTCCTTGTACGGTGATGGAGTGTGGCGACATAATCTACAGAAGCACTCTTCCGAAGTCGAATGGCTTGATGATTACTACTCCTGGCGTGCTTTTGGCTCTCGGTGCTGTTTCCTACCTCTGGGCTACGCCTGGGGTGGCCCCTGGTTTCTTTGACATGTTTGTTCTTTCCTTTGTTGAAAGGTTGTTCAGACCTACTTTTAGAAAGGATGACTTTGTCCTAGGGAAGAAGTTGGGTGAGGGATCCTTTGGTGTAGTTTATAGGGTTTCATCGACCAAGAAGTCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGCGCAGTAGAAATTTGGATGAATGAGCGTGTTCGGAGAGCTTGTGCAAACAGCTGTGCCGATTATGTTTACGGTTTCCTTGAGAGTTCTGGGAAGAAGGGTAGTGAATACTGGCTCATATGGAAATTTGAAGGGGACGCCACGCTAGCAGACCTAATGCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAGGTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATCATACAAACAATTATGAGGCAGTTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGAATTGTGCATAGGGATATTAAGCCCCAGAATATTATTTTCTCTGAAGGATCTCTTACATTCAAGATTATTGATCTTGGAGCTGCAGCAGATTTGCGGGTTGGCATCAACTATATTCCTAACGAGTTTCTTTTGGATCCAAGATATGCTGCCCCAGAGCAGTACATCATGAGCACACAAACTCCCTCTGCACCCTCAGCTCCAGTTGCAACTGCACTTTCCCCAGTCCTATGGCAGTTGAATCTACCGGACCGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCCTTCCCTGGATTACGATCCGATAATTGCCTCATACAATTTAACCGTCAGATGAAGAGGTGTGACTATGACTTGGTTGCGTGGAGAAAAAGTGTAGAACCTCGTTGCGGTGAACTAAGGAGAGGCTTTGAGCTTCTGGATTTAGATGGTGGAGTAGGATGGGAACTTCTGACATCGATGGTCCGCTACAAAGCAAGGCAACGGCTCAGTGCAAAAGCGGTGTTAGCTCATCCCTACTTTGACAGGGAAGGCTTGTTGGCATTGTCTTTCATGCAAAATCTAAGACTACAGCTCTTACGAGCAACACAGCAGGATTATGGAGAAGCAGCCAAATGGATTATTCAGCTCATGGCAAAATCTGGAACCTCACAAGCTGGAGGATTTACTGAAGCTCAACTCCAGGAACTAAGAGAAATTGAACCAAAGAAGAAGAACAATGTACAAAGAAATGCCTTAGCCTCGGCTCTCAAACTTCAGAGGAAGATCATAAAAACATTGAATGAGAGTGTGGATGAGCTTACCCGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCAGACAAGAATGA	1758	0.4556	MATVATARGIGVGATKLHQRPHHVHSNHSNKSLFLGQKLRFKPSVAESLYGGRITTFSNPKSFVACALGGEWLDLIRHLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLMITTPGVLLALGAVSYLWATPGVAPGFFDMFVLSFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVSSTKKSSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADYVYGFLESSGKKGSEYWLIWKFEGDATLADLMQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQFLFALDGLHSTGIVHRDIKPQNIIFSEGSLTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNCLIQFNRQMKRCDYDLVAWRKSVEPRCGELRRGFELLDLDGGVGWELLTSMVRYKARQRLSAKAVLAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTSQAGGFTEAQLQELREIEPKKKNNVQRNALASALKLQRKIIKTLNESVDELTRRRKSLWWSRWIPRQE	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g1338	585	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	299	311	IPR008271	GO:0004672\|GO:0006468
	Lele49g1338	585	CDD	STKc_SNT7_plant	162	475	-	-
	Lele49g1338	585	Pfam	Protein kinase domain	159	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele49g1338	585	SMART	serkin_6	158	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele49g1338	585	SUPERFAMILY	Protein kinase-like (PK-like)	141	477	IPR011009	-
	Lele49g1338	585	ProSiteProfiles	Protein kinase domain profile.	158	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele49g1338	585	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	267	480	-	-
	Lele49g1338	585	ProSitePatterns	Protein kinases ATP-binding region signature.	164	191	IPR017441	GO:0005524
	Lele49g1338	585	Gene3D	Transferase(Phosphotransferase) domain 1	266	479	-	-
	Lele49g1338	585	Coils	Coil	551	571	-	-
	Lele49g1338	585	Gene3D	Phosphorylase Kinase; domain 1	145	238	-	-
	Lele49g1338	585	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	73	560	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g1338	Lele-ChrLele49	9233127	9237979	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g1338	276	476	Core Cell Cycle Gene Families	AT2G38620	29.717	1.56e-16	77.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Lele49g1338		Pkinase	1e-18	CL0016