Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1335 ATGGACGGAGGAAGCTCTACGGATGAAAGCATTACTACTGATTCTGTTTCTGTTTCTCTTTCTCCGGTGATGATTCCATCGAAGAAGTCATCGCCGCCACCGCCCAACAGTCTATGCCGCGTCGGCAGCGGTGCTAGCACCATCGTGGATTCTGATATCGTCGGAGTCGAAGCTGAGTCCCGGAAACTTCCTTCGTCGAAATACAAAGGGGTTGTACCTCAGCCCAATGGCCGTTGGGGTTCTCAGATTTATGAGAAGCACCAGAGAGTCTGGTTAGGAACTTTCAATGAAGAAGATGAGGCGGCGAGAGTGTACGATATCGCCGCACAGCGATTCCGTGGGAGAGACGCGGTCACCAATTTTAAACCACTTGCCGCCGGCTCCGGCGCCGATGATGACCACGACGACGACTTTGAAGCGGCGTTCCTCAACGCGCACTCGAAAGCGGAGATCGTCGACATGCTAAGGAAGCACACTTACAATGACGAGCTGGAACAGTTCAAGAGAAACTACGGATTGACGGTGGACGCAAACGGGAAACGGATCATCAAGGAAGGATCCAAGGGTTCGGGTCGGGTCAACAACGCGCGTGATCAGCTGTTCGAGAAAGCAGTGACACCGAGCGACGTTGGAAAACTGAATCGGTTGGTGATCCCTAAGCAGCACGCGGAGAAGCACTTCCCCTTGCCGTTGCCGGTGGAAATCTCAGCGCCGTACACGGCGGCGACGGCCGCCGCGGCGAAGGGCGTGCTATTGAATTTCGAAGACGGTGGCGGAAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTTCTGACCAAGGGATGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCTGGAGACACGGTTTTTTTCTCCCGGTCGACCGAACCGGACAAGCAACTATACATCGACTGGAAGAAAGTCAGAACCATTAGCACCACCACCAGCAGCACAACTTCAGGGCCGGAATTGTTGGAACCGGTCGGTCCAGTGGTGGTGGAGCCGGTTCAGATGGTAAGACTATTTGGGGTCAACATATTGAAGATGCCCGGTTCAGATGCTATAGCTCCAGCAAGTGGGTGTTGGAATGGGAAGAGATTAAGAGAGATGGGTCTGTTCTCATTGGAATGTACCAAAAAGCCAAAGATCATTGGAGATTTGTAA 1185 0.5316 MDGGSSTDESITTDSVSVSLSPVMIPSKKSSPPPPNSLCRVGSGASTIVDSDIVGVEAESRKLPSSKYKGVVPQPNGRWGSQIYEKHQRVWLGTFNEEDEAARVYDIAAQRFRGRDAVTNFKPLAAGSGADDDHDDDFEAAFLNAHSKAEIVDMLRKHTYNDELEQFKRNYGLTVDANGKRIIKEGSKGSGRVNNARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPLPVEISAPYTAATAAAAKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVFFSRSTEPDKQLYIDWKKVRTISTTTSSTTSGPELLEPVGPVVVEPVQMVRLFGVNILKMPGSDAIAPASGCWNGKRLREMGLFSLECTKKPKIIGDL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1335 394 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Lele49g1335 394 Pfam B3 DNA binding domain 201 312 IPR003340 GO:0003677
Lele49g1335 394 Gene3D - 189 328 IPR015300 -
Lele49g1335 394 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Lele49g1335 394 CDD B3_DNA 200 301 IPR003340 GO:0003677
Lele49g1335 394 ProSiteProfiles B3 DNA-binding domain profile. 201 316 IPR003340 GO:0003677
Lele49g1335 394 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Lele49g1335 394 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Lele49g1335 394 SUPERFAMILY DNA-binding pseudobarrel domain 200 314 IPR015300 -
Lele49g1335 394 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 360 IPR044800 GO:0003700
Lele49g1335 394 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Lele49g1335 394 MobiDBLite consensus disorder prediction 1 43 - -
Lele49g1335 394 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Lele49g1335 394 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Lele49g1335 394 SMART B3_2 201 316 IPR003340 GO:0003677
Lele49g1335 394 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1335 Lele-ChrLele49 9191586 9192770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1335 1 394 B3 DNA Binding Superfamily AT1G25560 57.711 3.83e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele49g1335 B3 6e-28 CL0405