Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1333 ATGCAGACTCATCAGTACTCTAATTTCTCCTACATATCGTCATGTCTTGAAGAAGAACAAGTACTTGACGACGAAGACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACAACCACCACCTTACTAATACTTCTTCCAAATCTTCTTCGTCAAATGACGTTGTACCTCTCCATCGTCATCATCTTCATAACCACCACCACCAAAACCCTAGCTCTACTGATCTTGGCGTCACCATTGCCCTTCATATCGGCCTTCCTACCGCTACTAATAACGCTGGTGCTGGAAGTTCTGGCAAACCCGACCCATTAATGAGTTCCTCTTCGTCTTCGGGTGATGTTCCGGGTCAGTATTGGATTCCTTCTCCTGCTCAGATCCTTATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACTTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAGTATAGGAAAGGGCCAGAATCTCTCAGGGGGGCAAAACCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGCGCCGAAGGTTGTCGGAACAACATCCACCATCCGAGGTCCAGGCCATTGAAGGATTTCAGAACTCTTCAGACACACTACAAGAGGAAGCATGGAGCGAAGCCGTTCAGCTGCCGGAAGTGCGGGAAGCCGTTCGCCGTCAGAGGAGATTGGAGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTATCTGTGGCTCTGATTTCAAGCACAAGAGATCCCTCAAAGACCACGTACGTGCCTTCGGCGACGGCCATGCTCCTCACACTGTTGACAACAGACGCGATCACTACCACCACCACGAAGAAGAAGTTGACGACGAAGACGAAGACGAAGATGATGAGGAAGAAGACGATGATAATAATAGTGACGTGTTCGTCTACAGCGGAAATCATGCCTCCATTTACTTCTGA 963 0.4922 MQTHQYSNFSYISSCLEEEQVLDDEDSISLSLGPPGQHNHHLTNTSSKSSSSNDVVPLHRHHLHNHHHQNPSSTDLGVTIALHIGLPTATNNAGAGSSGKPDPLMSSSSSSGDVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNIHHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVDNRRDHYHHHEEEVDDEDEDEDDEEEDDDNNSDVFVYSGNHASIYF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1333 320 MobiDBLite consensus disorder prediction 27 55 - -
Lele49g1333 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Lele49g1333 320 MobiDBLite consensus disorder prediction 32 55 - -
Lele49g1333 320 MobiDBLite consensus disorder prediction 265 287 - -
Lele49g1333 320 Coils Coil 281 301 - -
Lele49g1333 320 MobiDBLite consensus disorder prediction 91 112 - -
Lele49g1333 320 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Lele49g1333 320 SUPERFAMILY beta-beta-alpha zinc fingers 126 155 IPR036236 -
Lele49g1333 320 FunFam Zinc finger protein WIP2 187 269 - -
Lele49g1333 320 PANTHER ZINC FINGER PROTEIN WIP2 34 296 IPR043584 GO:0003700|GO:0010468
Lele49g1333 320 MobiDBLite consensus disorder prediction 265 320 - -
Lele49g1333 320 SUPERFAMILY beta-beta-alpha zinc fingers 204 238 IPR036236 -
Lele49g1333 320 SMART c2h2final6 218 238 IPR013087 -
Lele49g1333 320 SMART c2h2final6 133 155 IPR013087 -
Lele49g1333 320 MobiDBLite consensus disorder prediction 288 306 - -
Lele49g1333 320 Gene3D Classic Zinc Finger 132 155 - -
Lele49g1333 320 Gene3D Classic Zinc Finger 214 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1333 Lele-ChrLele49 9173675 9175177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1333 24 277 C2H2 Transcription Factor Family AT1G13290 70.312 1.55e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g1333 None None None