Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1328 ATGTCTCATGCTGCAATTGGCCTGAGCTTCTATTCCTCCTCTTCGCCGGGGCACACCACGTCGCCGGTGATCATAGCTTTCACTCTCGGCATCCTCATATGTTTCATCGTAGGTTTCTGTTTCATCTACTTATGTCGATGCTGCTTCATGAATTACCTCTATGCCTGGGCCTTCCATCGTCCCACCGCCAATAACCTTCTCCACCAGATTCATTCCCCCACCGGCGCCGCATCTCCGATCCGAGGCCTCGACCCGGCGCTGCTTCAAATCTTCCCCACCTTCCCCTACGCCTCCGTGAAGGACTTCCAAGGGAAGAATAACAACAACAAAAGATATAGCCTAGAATGTGCGATTTGCTTGTTGGAATTCGAGGAAGATAGCTTCCTTCGCCTCTTAATCGGTTGCTGCCATGTCTTTCACCAAGAATGCATCGATCTCTGGCTTGATTCTCATAAAACATGCCCCGTGTGTCGCACAGATCTTGATTCTTCGTCAAAGGAAAAAGGTCACCATCAGGAAAACCAGACAATAATAGAACAACCCTTAACAGAGAATAATCACAACAGCAACAACAACAGCGAGACCCGTATTGATGTAAGGGAAGAAGAAGAAGAAGAAGAGGACATTTCAAGGAGAAGAGAGGAAGAAGTTGGAGAAGGAGAAGAGAATAAGAGGTTTTCAAGGTCACATTCAACGGGACATTCCATAGTTGTAATAAAAGGTGAAGAAAATGATGATGAGAATGAGGAGAATGATGAAGATAAATATACGTTGAAGTTACCAGAGCATGTTCAGATTAAGCTGATAAGAGGACATAACTACACTCAGAGTTGTGCCTCTTACACAGAGATGGCAAAACTTTATAGTAAATGTTGTTATGCTGAGGCCATATCAACCTGCACTACTTCTTCCTGCCAGCCTTTAAGGGTTTGA 933 0.4512 MSHAAIGLSFYSSSSPGHTTSPVIIAFTLGILICFIVGFCFIYLCRCCFMNYLYAWAFHRPTANNLLHQIHSPTGAASPIRGLDPALLQIFPTFPYASVKDFQGKNNNNKRYSLECAICLLEFEEDSFLRLLIGCCHVFHQECIDLWLDSHKTCPVCRTDLDSSSKEKGHHQENQTIIEQPLTENNHNSNNNSETRIDVREEEEEEEDISRRREEEVGEGEENKRFSRSHSTGHSIVVIKGEENDDENEENDEDKYTLKLPEHVQIKLIRGHNYTQSCASYTEMAKLYSKCCYAEAISTCTTSSCQPLRV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1328 310 Coils Coil 199 219 - -
Lele49g1328 310 MobiDBLite consensus disorder prediction 161 255 - -
Lele49g1328 310 Pfam Ring finger domain 115 158 IPR001841 -
Lele49g1328 310 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lele49g1328 310 CDD RING-H2_EL5_like 115 158 - -
Lele49g1328 310 FunFam E3 ubiquitin-protein ligase ATL6 73 164 - -
Lele49g1328 310 PANTHER RING FINGER DOMAIN-CONTAINING 21 168 - -
Lele49g1328 310 MobiDBLite consensus disorder prediction 211 229 - -
Lele49g1328 310 SUPERFAMILY RING/U-box 115 163 - -
Lele49g1328 310 MobiDBLite consensus disorder prediction 175 193 - -
Lele49g1328 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 166 IPR013083 -
Lele49g1328 310 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1328 Lele-ChrLele49 9116328 9117260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1328 22 286 C3H Transcription Factor Family AT2G35420 30.189 1.83e-31 116