Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1317 ATGGCCTCCGATGCACATGGTCCCCGTCGCAAGCACCGGCGCTCATCTTCTCCCGAAGAAGTCGAGCGATCTTTGAAGCGTCACAAGCACCGCCACCATGGCCACCGCCACCATAGGCACCGCCACGGTAGCAGGAAACACGAAGAAGAAGTTGAACTCGATTGCGAAACTGTTGATAAGGTTCCTTCTCCAACTCTTTCTCCTAATTCTGATCCGAAGATCCCTAGCCCTGATGATGATGTGGAGGAGGGGGAGATTCTTGAAGAGGAGGCTTCCAGTGGCCGAGATAGCGAGATTGGAAAAAAGCATTCGGAGTCCGATGCTGAGTCTGGTGAAATTATGGCCGCGGGAGATCGAGGTATTCGATCTGATAATTCAAATCCGGTACCTTTCACTGAAGAGATGTTGCATCGGAAAGATGTCAGTCCTTCTAAAGAGACTGTAGGGATCAATGCGAAAGGTTCGCAAACTAATAATGAGGATATCAGTAATGGTAGATTCATTAGTCCAGGATTGGATGGAGAAGATGATACTTGCCATAAGAGACACACTGGTTATAGTAGAAATGGAGTTGATGGTTCTTCTACTCATTCAAGTGCTAAGTCTCTAGATGGTAAGCATGCTAGAGCTAGTTCAGATGGTTTGGGCAATGGGTATTTGGATCGTAAATCTTCTAAAGAGGATAAATGGCAGCATGGGAAGCTCGGATGTTCTAAAGGAAATGATAAGCTGAAAGGTGACTATGATAATGAAGATCTGGAGGTTAATGGAGGCAAAGTAAGGACTCATAGAAAGAACTCCTCCCCTGAAAGTGGAGGTGGCAAACATAGGACCAGAGAAAGCTCACCTAGTCATAGACATAGGAGTCGATCCAGATCAATTGGACATAATCATATTGTAATGGAAGAATATGCTCATTCCAGGAGAAGGAATGATGAGGAAAGAATTGGGGACTATTGCAGGGACCGTGAACGTGTAAGTAGAGATTTGATGGCAGGTGATAGAAGGGAGCGTAGTTCCAGTTATTACAGTTGGGAGGCCCGAGATAGAGATAGGAGCAAGGATAGGGATGGGGATAGGTACCTTAGAAGGGAAAAGGAGCGAGAAAGGAGCCGGAATAGGGAGGATGACTGTGTGCATAGGAGCGAAAAAGAACGTGAAAGGAGTCATGAGAAGGATAGAAGGGATGTGGAAAAAGATAGGAGCAGGGGAAGAGAGGTGGACAGGGATAGAAGAAGAGAAAAGGAGCGAGATAGAGATAGGAGCTGGGAGATAGGGGCTGAGCGGGATAGAAGTGATAGGGTAAGAGAGAGGAGCAGGGACAGAGCAAGGGTTGGAGAGAGAGATAGAGTTTGGGAGAGTGAAAGGGATGATAAGCATCGAGAAAGGGATAAGATTAAGGAGAGGGAGAGGCATAAGGATAGAAACACTCTTGATAAAGATAAAAATCTGGGTTATGAGTATAGTCATGATAGCCGGGACAGAGATATACGCTCTAGGCATTCTAGACATGAAGAAGAAGAAAGCTATCGGGGGAGACAGAGAAATTCTGAGTCTTTGAAAGTTGATAACCCTATGGACAGAGGCGAGGATGAACAAGATGACTTAGATGAGACAGTTACGTTGCGATTTGCTGAACAAGAAGAGGAAGATCTCAATAGAATTAAGGAGGAGAGTAGGAGGAGGAGGGAAGCAATCTTAGAGAAATATAAAAAGCAGCAACCACAGCAGCATCAACAAGCACAACAAACTTCTGAAAATAAAGAAAAAGATGAGGATCCTGTGACTATTCCGGCTGTTGTTTCTGAAGCTCCTAATGCTAAAAATGATGGTGTTGATGTTTTTGAAGTGGAACCATCTTTCAATGTTGGTAAATCTCCTCGAGAAAATGGAAATGATTCATCTGAAAAGATCCCTGGTGTTGCTAGGGGCTTGGGAGAGGGTACTCCGAAGAGTGAAAGATCCGATGAAAAGTTTTGTGATGACATATTTGGTGAGACACCAACAGGAGTTCGCAAAGCGGGCAAAGGGGATGGATTGCGTGTTGACAGGGGTGGATTGCATGACAATTGGGATGATGCAGAGGGGTATTACAGCTATCGCTTTGGTGAAGTACTTGATGGTCGATATGAAGTTGTTGCAGCTCATGGTAGAGGTGTCTTTTCAACAGTTGTTCGTGCAAAGAATCTCAAGTCTGGTAATGGTGAGCCAGAAGAAGTAGCTATAAAAATTATTCGCAATAATGACACTATGTACAAGGCTGGTATGGATGAGTTGGTCATACTAAAGAAATTAGTAGGTGCAGATCCAGAAGATAAGCGTCATTGTGTTCGTTTCCTTTCGAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCGTACGCGAAACAACTTTTTATAGCTTTGAAGCATCTTCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGACAATATGTTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGCGACTTTGGTAATGCTATGTTTGCTGGAAAGAATGAAGTTACACCATACCTTGTGAGTCGTTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCAATATGATCATCCGTTGGATATCTGGTCTGTAGGCTGTTGTTTGTATGAAGTCTATGCTGGAAAAGTTCTTTTCCCAGGTCCTTCTAACAATGACATGCTACGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAGAAGATGCTTCGCAAGGGAGCATTTATTGATCAGCATTTTGACCAGGACTTGAATTTTCTTGCTACAGAAGAGGATCCAGTGACGAAAAAGGCTATAAAGCGGTTGATTCTCAACATAAAGCCCAAAGATATTGGAACTATCATTACTGGCTCTCCTGGAGAGGATCCAAAGATGTTAGCCAATTTCAAAGATCTTCTGGACAAGGTTTTTGTCCTGGATCCAGAGAAGAGGTTGACAGTCTCACAAGCATTGAGCCACCCATTCATCACTGGCAAGTGA 3087 0.4373 MASDAHGPRRKHRRSSSPEEVERSLKRHKHRHHGHRHHRHRHGSRKHEEEVELDCETVDKVPSPTLSPNSDPKIPSPDDDVEEGEILEEEASSGRDSEIGKKHSESDAESGEIMAAGDRGIRSDNSNPVPFTEEMLHRKDVSPSKETVGINAKGSQTNNEDISNGRFISPGLDGEDDTCHKRHTGYSRNGVDGSSTHSSAKSLDGKHARASSDGLGNGYLDRKSSKEDKWQHGKLGCSKGNDKLKGDYDNEDLEVNGGKVRTHRKNSSPESGGGKHRTRESSPSHRHRSRSRSIGHNHIVMEEYAHSRRRNDEERIGDYCRDRERVSRDLMAGDRRERSSSYYSWEARDRDRSKDRDGDRYLRREKERERSRNREDDCVHRSEKERERSHEKDRRDVEKDRSRGREVDRDRRREKERDRDRSWEIGAERDRSDRVRERSRDRARVGERDRVWESERDDKHRERDKIKERERHKDRNTLDKDKNLGYEYSHDSRDRDIRSRHSRHEEEESYRGRQRNSESLKVDNPMDRGEDEQDDLDETVTLRFAEQEEEDLNRIKEESRRRREAILEKYKKQQPQQHQQAQQTSENKEKDEDPVTIPAVVSEAPNAKNDGVDVFEVEPSFNVGKSPRENGNDSSEKIPGVARGLGEGTPKSERSDEKFCDDIFGETPTGVRKAGKGDGLRVDRGGLHDNWDDAEGYYSYRFGEVLDGRYEVVAAHGRGVFSTVVRAKNLKSGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPEDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYEVYAGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFIDQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTIITGSPGEDPKMLANFKDLLDKVFVLDPEKRLTVSQALSHPFITGK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1317 1028 MobiDBLite consensus disorder prediction 88 109 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 295 528 - -
Lele49g1317 1028 SMART serkin_6 710 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1317 1028 FunFam serine/threonine-protein kinase PRP4 homolog 681 769 - -
Lele49g1317 1028 ProSiteProfiles Protein kinase domain profile. 710 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1317 1028 MobiDBLite consensus disorder prediction 148 165 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 538 571 - -
Lele49g1317 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Lele49g1317 1028 Coils Coil 542 565 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 280 294 - -
Lele49g1317 1028 SUPERFAMILY Protein kinase-like (PK-like) 697 1027 IPR011009 -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 220 279 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 26 44 - -
Lele49g1317 1028 Gene3D Phosphorylase Kinase; domain 1 681 769 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 1 664 - -
Lele49g1317 1028 FunFam Serine/threonine-protein kinase PRP4 homolog 770 1026 - -
Lele49g1317 1028 Pfam Protein kinase domain 711 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1317 1028 MobiDBLite consensus disorder prediction 173 187 - -
Lele49g1317 1028 MobiDBLite consensus disorder prediction 649 663 - -
Lele49g1317 1028 PANTHER DUAL SPECIFICITY PROTEIN KINASE 415 1026 - -
Lele49g1317 1028 CDD STKc_PRP4 709 1025 IPR044092 GO:0004674|GO:0006468|GO:0045292
Lele49g1317 1028 Gene3D Transferase(Phosphotransferase) domain 1 770 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1317 Lele-ChrLele49 9010375 9016985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1317 663 1027 MAP Kinase Gene Family AT2G18170 29.737 2.65e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Lele49g1317 Pkinase 1.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1317 49 9010375 9016985 Lele49g1317 49 9010375 9016985 ECH
Lele49g1317 49 9010375 9016985 Lele51g1324 51 8979908 8988524 hybridization
Lele49g1317 49 9010375 9016985 Lele52g1464 52 18631840 18638403 hybridization