Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1312 ATGAAGATTTTCGTTAAGACTCTGAAAGGCACTCACTTTGAAATTGAAGTGAAGCCAGAAGACCCGGTTACTGAAGTGAAGAAAAAAATAGAAACTGTTCAGGGTGCGGATGTCTATCCTGCTGCACAACAGATGCTTATACATCAAGGGAAGGTTCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTAGTTGAAAATAGTTTTGTCGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGAGGGTTCTACTACTTCAGCTGCACCTTCAACCAAGACCCCAGCAACAAGTGCTGCTCCGACCTCTACTTCTGTTTCAAGTTCAACCACACCTCAAGCTTTTGCTGCAGCGCCTGCTCCTTCTCCTGCACCAGCACCAGCTCCAGCACCTGCTCCTGCTCCTGTCACTTCAGGCACTGCTGTGTCAGATTCTGATGTCTATGGATCAGCAGCATCTAACCTTGTAGCTGGAAGCAATTTGGAGGAAACCATTCAACAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTCCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTAGAGTATTTGTACACAGGTATTCCAGAGCAAGCTGAACCTCCTCCTGTGGCCCGAGTGCCTGCAAGTCCACAAACTGCAAATCCTCCAGCAGCAGCTCCACAAGCTGCACAGCCAGCACCTACTCTTACAAGTGGACCAAATGCTAATCCCCTAGACCTTTTCCCCCAGGGCCTTCCCAATGTTGGTTCTGATGCTGCTGGTGCTGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTTATGACATTGATTCAAGAGCACCAGACTGACTTCCTCCGCCTGATAAATGAACCAGCGGAAGGTGGTGAGGGGAACATATTAGGGCAGCTGACTGCTGCCATGCCACAACAAATAGCTGTCACCTCTGAGGAGCGACAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCACTGGTGTTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAATGA 1182 0.4763 MKIFVKTLKGTHFEIEVKPEDPVTEVKKKIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVVENSFVVIMLSKSKSSSGEGSTTSAAPSTKTPATSAAPTSTSVSSSTTPQAFAAAPAPSPAPAPAPAPAPAPVTSGTAVSDSDVYGSAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEPPPVARVPASPQTANPPAAAPQAAQPAPTLTSGPNANPLDLFPQGLPNVGSDAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMTLIQEHQTDFLRLINEPAEGGEGNILGQLTAAMPQQIAVTSEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1312 393 FunFam UV excision repair protein RAD23 homolog 155 205 - -
Lele49g1312 393 FunFam UV excision repair protein RAD23 homolog 340 388 - -
Lele49g1312 393 SUPERFAMILY XPC-binding domain 264 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele49g1312 393 Pfam XPC-binding domain 268 324 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele49g1312 393 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele49g1312 393 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 382 - -
Lele49g1312 393 MobiDBLite consensus disorder prediction 78 117 - -
Lele49g1312 393 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 346 387 IPR015940 -
Lele49g1312 393 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lele49g1312 393 Pfam UBA/TS-N domain 349 384 IPR015940 -
Lele49g1312 393 Pfam UBA/TS-N domain 162 200 IPR015940 -
Lele49g1312 393 SMART uba_6 349 386 IPR015940 -
Lele49g1312 393 SMART uba_6 162 202 IPR015940 -
Lele49g1312 393 Gene3D - 258 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele49g1312 393 Gene3D - 155 205 - -
Lele49g1312 393 FunFam UV excision repair protein RAD23 1 80 - -
Lele49g1312 393 MobiDBLite consensus disorder prediction 208 248 - -
Lele49g1312 393 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele49g1312 393 CDD Ubl_Rad23 1 74 - -
Lele49g1312 393 SUPERFAMILY UBA-like 159 209 IPR009060 GO:0005515
Lele49g1312 393 MobiDBLite consensus disorder prediction 78 145 - -
Lele49g1312 393 MobiDBLite consensus disorder prediction 119 135 - -
Lele49g1312 393 SUPERFAMILY UBA-like 331 391 IPR009060 GO:0005515
Lele49g1312 393 Gene3D - 340 388 - -
Lele49g1312 393 PRINTS DNA repair protein Rad23 signature 360 374 IPR004806 GO:0006289
Lele49g1312 393 PRINTS DNA repair protein Rad23 signature 375 390 IPR004806 GO:0006289
Lele49g1312 393 PRINTS DNA repair protein Rad23 signature 343 359 IPR004806 GO:0006289
Lele49g1312 393 PRINTS DNA repair protein Rad23 signature 294 316 IPR004806 GO:0006289
Lele49g1312 393 SMART CBM 266 309 IPR006636 -
Lele49g1312 393 TIGRFAM rad23: UV excision repair protein Rad23 1 392 IPR004806 GO:0006289
Lele49g1312 393 CDD UBA1_Rad23_plant 156 205 - -
Lele49g1312 393 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Lele49g1312 393 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele49g1312 393 Gene3D - 1 80 - -
Lele49g1312 393 FunFam UV excision repair protein RAD23 B 259 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1312 Lele-ChrLele49 8955875 8961276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1312 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 4.49e-08 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1312 49 8955875 8961276 Lele49g1312 49 8955875 8961276 ECH
Lele49g1312 49 8955875 8961276 Lele51g1318 51 8918801 8924131 hybridization
Lele49g1312 49 8955875 8961276 Lele52g1470 52 18695158 18700531 hybridization