Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1309 ATGCCCGAACCTCGGAAGCAACCGATGAACATGAACAATTTCGGCAAAAAGATGAAGCAGAAGCTAAATCCCATTCCTTCGAGAAGGCTTCGCATAATCTGTGACGACCCTTATGCGACAGATTCGTCTTCAAGCGAAGACGAAGGAGAACGACGACTATGGCCAAGGAAGATGAAACGAATCGTTCGTGAGCTCACTCTTCCTCTTTCTTCTGCTATGTCTAAATCCATTGAAACTGAAAGCTCATTTCAGGAGAGCAACAATGGAGTCATCATGAAGACCTCTTTCTCCTCCAAGCTTGCTGCAGATGGTCAAACCCAGAACAAGAAGAGGGTTTTGACCAAAACCCCATCAACGAAAAGCTCGTCTTCTTCTTCGAGATTCAGAGGCGTTCGACAGAGAAAATGGGGAAAATGGGCTGCTGAAATTCGTGATCCATTCAAAGGTGTTCGTATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAGGCCTATGAAGCGAAGAAGATGGAGTTCGAAGCCATGGCTAAAGCTCAGGCTCAGGCTCAATCTGAGAAGAGTCACATTGTTTCTTCTTCTTCAGTTCAAGTCGCTGCTTCTGTATCCGAAGATTCTGAGAGTGTCTTCTCTCAAACCTCAACTTCCTCTGTGCTTGAACTCGATACCTCAACTTCCAAATCCACTGAAGGTGGCGATGTCAACATCATAAATAGCAGTTCTAGCCAAGAACAAAAAGAAGAAAATCAACAAGAACAACAACACCAACAACAGGCAGCAAATATTACTATGGAGGCTGAAGATTTTAAGAATGAATTTGCAGAACTCCAAATCCCAGATTTGAGCTTCCTGAACGAGCCTCCAGTAGTGCAAGCACCACCAACAACAACAGCAACATCATCTGCAGCAGGAGCAGTAGATGTTTCAGTTTCAGACATGAACCTGGGATTCGATCTGGACTGGGTAATGTTCGAGGATTTTGGTCAGGGTTTGGATGGCCCGTTGGGTTTGGACGACGTGCAAATATGTGGGTTTGATGAGGATGACATGAATGCAAGTGAGCTGCCTGATTTTGATCTTGATATGTGTGTTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1146 0.4485 MPEPRKQPMNMNNFGKKMKQKLNPIPSRRLRIICDDPYATDSSSSEDEGERRLWPRKMKRIVRELTLPLSSAMSKSIETESSFQESNNGVIMKTSFSSKLAADGQTQNKKRVLTKTPSTKSSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAMAKAQAQAQSEKSHIVSSSSVQVAASVSEDSESVFSQTSTSSVLELDTSTSKSTEGGDVNIINSSSSQEQKEENQQEQQHQQQAANITMEAEDFKNEFAELQIPDLSFLNEPPVVQAPPTTTATSSAAGAVDVSVSDMNLGFDLDWVMFEDFGQGLDGPLGLDDVQICGFDEDDMNASELPDFDLDMCVDEFAGWTEEPLNIPCV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1309 381 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 Coils Coil 253 273 - -
Lele49g1309 381 SUPERFAMILY DNA-binding domain 126 174 IPR016177 GO:0003677
Lele49g1309 381 MobiDBLite consensus disorder prediction 101 127 - -
Lele49g1309 381 MobiDBLite consensus disorder prediction 205 260 - -
Lele49g1309 381 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 CDD AP2 127 169 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 265 - -
Lele49g1309 381 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 MobiDBLite consensus disorder prediction 1 26 - -
Lele49g1309 381 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
Lele49g1309 381 Gene3D AP2/ERF domain 126 182 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1309 Lele-ChrLele49 8924375 8925520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1309 26 380 AP2-EREBP Transcription Factor Family AT1G68550 32.698 9.27e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele49g1309 AP2 2.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1309 49 8924375 8925520 Lele49g1309 49 8924375 8925520 ECH
Lele49g1309 49 8924375 8925520 Lele51g1314 51 8888139 8889290 hybridization
Lele49g1309 49 8924375 8925520 Lele52g1474 52 18733428 18734582 hybridization