Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1296 ATGGGACTTCCTTTCTTCTCTACTCACTGTTCCCACCATTGTTACTCCATTCAATTTCACTATTCATCTATTACTCTGTTTTCTTCTTCTACCAGAAGGAACCGCGGGCCCCGCATGGATGCTGCCCCCGTCTTCAACCGCAACCGCCTGAAAGAGAAGGTGATTGTCATAATGGGAGCCACCGGGGCCGGAAAATCCAGCCTCTCCATTGACCTCGCAACCCGTTTCCCCTTATCCGAAATCATTAACTCAGATAAAATGCAGGTGTACAGAGGCCACGATATCACCACCAACAAGATCCCCATTGACGAGCGCAACGGCGTCCCTCATCATCTCCTCGGCGACGTCGACCCGGAAAATGGAGAGTTCACGCCTTTAGATTTTCGCTTGCGCGCCGGCTCTATCATCTCCGACATTACCTCCAGGAGGAAGCTTCCCATTGTCGTTGGTGGGTCTAACTCGTTCGTTCACTCTCTGCTCACCGACCGATTCGACCCCGATGTAAATGTATTCGATGGGTCTCCGTCGTCATCGTCGAGTTTGACCTCGTCGGAGTTGAGATACGAGTGCTGCTTCTTGTGGGTGGACGTGGAATTTCCATTGTTGTCGGATTACTTAATGAAGCGAGTCGACGACATGCTCGACTTGGGGATGGTGGAAGAGTTAGCCGAGTTCTTCGACCCGGACGCGGACGATTTAGAGGATGATTCGGAGGACCGGACGGGATTGAGAAAAGCCATCGGAGTCCCGGAGTTCGACCGGTATTTCAAGAGATACCCGCCGCCGGGAGGGCTGAGCGCGGAGTGTAAGAGCGAAGAGGATCGAGTACGGAAGGGTGCATACGAAGAGGCGGTGAGGGCGATAAAGGACAACACGTGTCGGCTAGTGAAGAAACAGATAGAGAAAATCTTGCGGCTAAGAGGGTCGGGGTGGGACCTACGGAGGGTGGACGCGACGGAGGTGTTCAGGGCGAAGTTGGGTGGAGACGGCGGGGAGAGGTGGTCCGATATTTGGGAGAGGGAGGTGCTTGAGCCAAGCGTGAAGATTGTGAATAGCTTCTTGCGGGAGTAG 1071 0.5387 MGLPFFSTHCSHHCYSIQFHYSSITLFSSSTRRNRGPRMDAAPVFNRNRLKEKVIVIMGATGAGKSSLSIDLATRFPLSEIINSDKMQVYRGHDITTNKIPIDERNGVPHHLLGDVDPENGEFTPLDFRLRAGSIISDITSRRKLPIVVGGSNSFVHSLLTDRFDPDVNVFDGSPSSSSSLTSSELRYECCFLWVDVEFPLLSDYLMKRVDDMLDLGMVEELAEFFDPDADDLEDDSEDRTGLRKAIGVPEFDRYFKRYPPPGGLSAECKSEEDRVRKGAYEEAVRAIKDNTCRLVKKQIEKILRLRGSGWDLRRVDATEVFRAKLGGDGGERWSDIWEREVLEPSVKIVNSFLRE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1296 356 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 51 354 IPR039657 -
Lele49g1296 356 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 199 313 - -
Lele49g1296 356 Pfam IPP transferase 182 300 - -
Lele49g1296 356 Pfam IPP transferase 88 164 - -
Lele49g1296 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 234 IPR027417 -
Lele49g1296 356 Gene3D - 51 354 IPR027417 -
Lele49g1296 356 FunFam Adenylate isopentenyltransferase 199 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1296 Lele-ChrLele49 8778234 8779304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1296 187 354 C2H2 Transcription Factor Family AT2G27760 29.319 1.11e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1296 49 8778234 8779304 Lele49g1296 49 8778234 8779304 ECH
Lele49g1296 49 8778234 8779304 Lele51g1304 51 8750536 8751606 hybridization
Lele49g1296 49 8778234 8779304 Lele52g1488 52 18896630 18897697 hybridization