Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1285 ATGGAGGATCACCAAATTCTCTACCCTTCTAAACCAGCAAATCCCATAAAGCTTTTCGGCTTCAGCGTCCATGGCCACCACCACCCACACGTACTCCATCAAGTTGAAGAAGACGGAGCAGTGCTTGCAGATGATGTCTCAGGCCCAATCTTCAAGCCAACTTCCCCATCTGGATCGCCGGATTCCGCCGCATCCGCCGGTGCCGGACCTTTCCCTGCTTCCTCCGGCGACAGGAAATACGAGTGTCAGTATTGTTGTCGCGAGTTTGCCAACTCGCAGGCCCTCGGTGGCCACCAGAACGCTCACAAGAAAGAGCGCCAGCAGCTGAAGCGGGCCCAGTTACAAGCCACACGAAACGCCGCCGTTTCGTTCGTGAGGAATCCAATAATCTCTGCCTTCGCCCCTCCGCCTCATTTGCTTTCTTCGGCCGGCCACGTCATGGTTCCGGCATCTACTACTCCGTCGTCCTGGGTCTATGTCCCGCCACACGCCGCTCGTCCCCCATTTCACGTGTCGGTATCACACGGGTGCGTGTTCCCTTCGTCGACGAATAGTACTATCTGTAGTACTAATAGTAATCAGAGTGGGAGATCAACAGGCGGTGGGATGTTCTCCTGTGGTGGCAGCGCAGGGGAGTCCATGGGATCTCAAGTGCATGGTAGGGCCCATGGGCCATCTTTAAGTAGATTTTCAAAAGCCGATGGTGGGCCCAACTTCGATGATGCATTGGGCTTGGACTTGCATCTAAGCCTCGCGCCAGCTGCGCCGTGA 771 0.559 MEDHQILYPSKPANPIKLFGFSVHGHHHPHVLHQVEEDGAVLADDVSGPIFKPTSPSGSPDSAASAGAGPFPASSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLSSAGHVMVPASTTPSSWVYVPPHAARPPFHVSVSHGCVFPSSTNSTICSTNSNQSGRSTGGGMFSCGGSAGESMGSQVHGRAHGPSLSRFSKADGGPNFDDALGLDLHLSLAPAAP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1285 256 MobiDBLite consensus disorder prediction 190 233 - -
Lele49g1285 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Lele49g1285 256 MobiDBLite consensus disorder prediction 45 72 - -
Lele49g1285 256 FunFam Zinc finger protein GIS3 66 130 - -
Lele49g1285 256 Gene3D Classic Zinc Finger 69 127 - -
Lele49g1285 256 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Lele49g1285 256 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Lele49g1285 256 PANTHER ZINC FINGER PROTEIN 5 12 255 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1285 Lele-ChrLele49 8671295 8672065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1285 16 254 C2H2 Transcription Factor Family AT1G68360 45.353 6.43e-53 170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1285 49 8671295 8672065 Lele49g1285 49 8671295 8672065 ECH
Lele49g1285 49 8671295 8672065 Lele51g1294 51 8650645 8651418 hybridization
Lele49g1285 49 8671295 8672065 Lele52g1502 52 19025223 19025987 hybridization