Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1264 ATGGCGAGATTTCACTGGGACCCACCACAAAGTTCACATTCATGCACCCTTCTTGACTGCCACGTTGAATCTTGTATAGCGAAAATGCATAATAAGGACGCTTGCTCGTCTTCAAATGGCGGAGTTGGCACCAACATCGCTGCTTCTGGTCAAATGCAGTCGAATGACGCCTTTTATGGGGCCATCTACTCCACTCTGTTTTCTGACAAGCCATCCCTGCCTGCTACGGACAATGTCGACCTCTCGCTTCACTCGTATGAAGGAAGCTCTCCCCTGAAGTACAGTGACTCGCCGATTCAGAGTCACCTGTACGACTCCTGTGCCATACAGAATCATCAAGATATGGTGAACCGCCATAGCATGTGCCTAAATCGCCTGGCCGAAACCTCAAAGGAGGTTGAGGCTCTGCGGCAGGAGAATAACCAACTTCGGGCTGTGAACAGGGAGCTGAACAACCAATTGAGCCTCCTCATTCAGGTCTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCATACCGAAGCGTTTGACGTCATAAATGGGTTTCGTGGCTTACGTGTTGAGGACAATTTCGGGGATGGGAAAGAGAACTGTGAAAATTGGAATAAGGATCAAGAGGTTTTGAACGAGAGCCCAACAAGTGTGATTGAGAACACTGTCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAAGTCGCTCAGGCTGCGACCACTGGTTCCAGCAATGGAAGTCGGCCCAAGGGCACTGCTCGGCCACGCACATCTTTGACTTCAACTGACGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAGAGGGAGGAAGAGCCTCTGGAGATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAGCTGTGCAACAAATGGCAGGAGACAGGAACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGCATTGGTGAACTCCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCAGGCGTTGTATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATTGCACAGCCACAGCCTAAGTCCAGGGCAATGAACCTGCACAGATAA 1146 0.5079 MARFHWDPPQSSHSCTLLDCHVESCIAKMHNKDACSSSNGGVGTNIAASGQMQSNDAFYGAIYSTLFSDKPSLPATDNVDLSLHSYEGSSPLKYSDSPIQSHLYDSCAIQNHQDMVNRHSMCLNRLAETSKEVEALRQENNQLRAVNRELNNQLSLLIQVSVQNQLDGSSGHTEAFDVINGFRGLRVEDNFGDGKENCENWNKDQEVLNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAQAATTGSSNGSRPKGTARPRTSLTSTDVVQKVYVRGGKREEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPQPKSRAMNLHR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1264 381 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Lele49g1264 381 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Lele49g1264 381 FunFam Zinc finger protein 36, C3H1 type-like 1 329 365 - -
Lele49g1264 381 PANTHER CCCH ZINC FINGER/TIS11-RELATED 111 368 IPR045877 GO:0003729
Lele49g1264 381 Coils Coil 126 160 - -
Lele49g1264 381 SUPERFAMILY CCCH zinc finger 292 327 IPR036855 GO:0046872
Lele49g1264 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 321 IPR000571 GO:0046872
Lele49g1264 381 MobiDBLite consensus disorder prediction 244 264 - -
Lele49g1264 381 FunFam zinc finger CCCH domain-containing protein 15-like 289 328 - -
Lele49g1264 381 Gene3D - 290 328 - -
Lele49g1264 381 Gene3D - 329 365 - -
Lele49g1264 381 SUPERFAMILY CCCH zinc finger 329 363 IPR036855 GO:0046872
Lele49g1264 381 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Lele49g1264 381 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1264 Lele-ChrLele49 8512551 8515066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1264 94 374 C3H Transcription Factor Family AT1G68200 53.103 3.52e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele49g1264 zf-CCCH 5.2e-10 CL0537