Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1255 ATGGGATTGCAGAACCAGCTAAACGATGTCGCTTCGGATTCGATTCCTCTTCTTTTCTTGGCTCTCGTCGCCGACTGCCTCAACCAGCTCCGTTCCTTCCTTATTGCCCTCCTCCAATCAATTGGACTCTCCAGATTCAACCCGAGCCCCGTCGTTGTTGATGATGGATTTTTCACCGCCGTTGGATCGGGCCTTGCCAGCTTAATCGTCCTCTCTGAGCAGCTCAATCTTAATCGCCGTGTCTCCTACAGATACTCCATCGTAGGTGGCGGCGATGATGGCCCCGCCGGTGTGATTGGATCTCCCAAGTGTGTGGTGTGCCAGAGCACGTTCGAAGATGGGGACCAAGTTCGACGGCTTCCTTGCCGCCATGCTTTTCACCGATGCTGCTTCGATGGCTGGTTGGACCACCTCAATTTTAACTGCCCTCTTTGTCGGACACCGCTGGTGTCCGACGAGCGCGTGGCCCTTGCTGAGCGGCGCGTCAGTCCAGAGCTTGTATCCTGGTTCTCTTTTCGATGA 522 0.5517 MGLQNQLNDVASDSIPLLFLALVADCLNQLRSFLIALLQSIGLSRFNPSPVVVDDGFFTAVGSGLASLIVLSEQLNLNRRVSYRYSIVGGGDDGPAGVIGSPKCVVCQSTFEDGDQVRRLPCRHAFHRCCFDGWLDHLNFNCPLCRTPLVSDERVALAERRVSPELVSWFSFR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1255 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 155 IPR013083 -
Lele49g1255 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lele49g1255 173 Pfam Ring finger domain 103 146 IPR001841 -
Lele49g1255 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 79 158 - -
Lele49g1255 173 SUPERFAMILY RING/U-box 103 152 - -
Lele49g1255 173 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1255 Lele-ChrLele49 8436879 8437400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1255 1 173 C3H Transcription Factor Family AT1G15100 47.977 3.01e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1255 49 8436879 8437400 Lele51g1271 51 8453267 8453788 hybridization
Lele49g1255 49 8436879 8437400 Lele52g1525 52 19257277 19257798 hybridization