Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1247 ATGGCTTCACGCAGACTCGTATCTTCTCTGATTCGATCTTCCCTTCGTCGATCTTCCGCTCAATCTTCCATTACAAGCCCCAGACCTAGACTTTCTTCTTCCACAGTGTCGGGTCGTCCTTCTCCTTATGGATACCTCCTCAACCGTATCACTGAGTATGCTACATCAGCCGCGGCCGCTGCTGCCCCGTCTCCTCCCGCCAAGAAGGATGCTGGGACTGGTGGTGGGAAGATTGTTGATGAGTTCACTGGCAAGGGTGCGATCGGTCAGGTGTGCCAGGTCATTGGTGCCGTCGTGGATGTTAGATTCGAGGAGGGATTGCCTCCGATCTTGACTGCCCTTGAGGTTATGGACCATTCCATTCGATTGGTGTTGGAGGTGGCTCAGCATTTGGGTGAGAACATGGTCAGGACTATTGCTATGGATGGAACTGAAGGGGTTGTTAGAGGACAGCGCGTGCTCAACACTGGATCCCCTATTACCGTTCCTGTGGGTAGGGCTACCCTTGGACGTATCATTAATGTCATTGGAGAGGCTATTGACGAGAAGGGTGAACTCAAAACTGAGCACTACCTGCCAATTCATCGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAACAGATCCTTGTTACAGGAATTAAGGTTGTCGACCTGCTTGCACCATACCAAAGAGGTGGTAAGATTGGATTGTTTGGTGGTGCTGGTGTGGGAAAAACTGTGCTTATCATGGAACTGATTAACAACGTTGCAAAGGCCCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAGCGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTAGGTGACAAGCAGAGTGAGAGTAAATGTGCTCTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCCCGTGCCCGTGTTGGTCTGACTGGGCTTACAGTTGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTCATTGACAACATTTTCCGTTTTACCCAAGCCAACTCAGAGGTGTCTGCTTTGCTGGGTCGTATCCCTTCTGCTGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATTTACGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCTACAACTGTGTTATCACGACAGATCTCTGAGCTGGGTATCTATCCTGCTGTTGATCCCTTGGATTCTACATCTCGTATGCTTTCACCCCTTATATTGGGTGAGGATCACTACAACACTGCTCGTGGTGTACAAAAGGTACTTCAGAACTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAGTTGACTGTTGCTCGTGCGCGTAAAATCCAACGATTCTTGAGCCAGCCCTTCCATGTTGCTGAAGTCTTCACGGGTGCCCCTGGTAAATATGTAGACTTGAAGGAGAGCATCAACAGCTTCCAGGGTGTGTTGGATGGTAAATACGATGACCTTCCTGAGCAATCATTCTACATGGTTGGAGGTATCGATGAGGTTGTCGCCAAGGCAGATAAGATTGCTAAGGAATCTACATCATAA 1680 0.4827 MASRRLVSSLIRSSLRRSSAQSSITSPRPRLSSSTVSGRPSPYGYLLNRITEYATSAAAAAAPSPPAKKDAGTGGGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDHSIRLVLEVAQHLGENMVRTIAMDGTEGVVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDEKGELKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVVAKADKIAKESTS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1247 559 CDD ATP-synt_F1_beta_C 442 549 - -
Lele49g1247 559 FunFam ATP synthase subunit beta 160 437 - -
Lele49g1247 559 Gene3D - 160 437 IPR027417 -
Lele49g1247 559 CDD F1-ATPase_beta 159 440 - -
Lele49g1247 559 TIGRFAM atpD: ATP synthase F1, beta subunit 88 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lele49g1247 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Lele49g1247 559 FunFam ATP synthase subunit beta 438 557 - -
Lele49g1247 559 Gene3D - 438 559 IPR024034 -
Lele49g1247 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
Lele49g1247 559 SMART AAA_5 226 498 IPR003593 -
Lele49g1247 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Lele49g1247 559 CDD ATP-synt_F1_beta_N 87 160 - -
Lele49g1247 559 PANTHER ATP SYNTHASE 70 556 - -
Lele49g1247 559 Gene3D - 78 159 - -
Lele49g1247 559 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lele49g1247 559 PIRSF ATPase_subunit_beta 6 559 - -
Lele49g1247 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Lele49g1247 559 MobiDBLite consensus disorder prediction 1 39 - -
Lele49g1247 559 FunFam ATP synthase subunit beta 77 159 - -
Lele49g1247 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lele49g1247 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Lele49g1247 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Lele49g1247 559 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1247 Lele-ChrLele49 8346116 8349776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1247 124 496 Primary Pumps ATPases(2) AT1G20260 28.928 9.16e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1247 49 8346116 8349776 Lele49g1247 49 8346116 8349776 ECH
Lele49g1247 49 8346116 8349776 Lele51g1265 51 8367324 8370998 hybridization
Lele49g1247 49 8346116 8349776 Lele52g1533 52 19349314 19352971 hybridization