Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1223 ATGCATTCAATTCCCTTGTCTTCCATCCAAGAAGGGGGCACGGCTCCTACTCCTTTGAAGTTTACTAATGGCCTTGATGAGCATTTATCTACCGCGCACATCTCAAAAGAGGAAAAGCCAGGAGTTGAGTATGACTCCAATAGTGAGGACAAGCACCCAGAATCAAACCACATTGCAGGGGAGCCGGACGTGTTACAGTGGCCTCTGAAGAACTTCCAGCTCGTAGCAGCTACAGAACCTCAACAAAATGCTTCAGCGGCAGAACAAGATAGAGTGATACTACAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGACTACCGTTATGCCCTTTCTGCGTTTCAAGCCTTTGTAATCTGCTTGAGCAGCTTTGACACGAAACCTGCTTGCGAGTGA 399 0.4687 MHSIPLSSIQEGGTAPTPLKFTNGLDEHLSTAHISKEEKPGVEYDSNSEDKHPESNHIAGEPDVLQWPLKNFQLVAATEPQQNASAAEQDRVILQFGKIGKDIFTMDYRYALSAFQAFVICLSSFDTKPACE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1223 132 Pfam Tub family 69 127 IPR000007 -
Lele49g1223 132 Gene3D Tubby Protein; Chain A 28 132 IPR025659 -
Lele49g1223 132 MobiDBLite consensus disorder prediction 1 17 - -
Lele49g1223 132 PRINTS Tubby superfamily signature 60 76 IPR000007 -
Lele49g1223 132 PRINTS Tubby superfamily signature 89 108 IPR000007 -
Lele49g1223 132 PRINTS Tubby superfamily signature 110 132 IPR000007 -
Lele49g1223 132 MobiDBLite consensus disorder prediction 1 60 - -
Lele49g1223 132 PANTHER TUBBY-RELATED 69 130 - -
Lele49g1223 132 MobiDBLite consensus disorder prediction 30 58 - -
Lele49g1223 132 SUPERFAMILY Tubby C-terminal domain-like 66 132 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1223 Lele-ChrLele49 8207004 8207469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1223 1 132 TUB Transcription Factor Family AT1G47270 46.835 2.66e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele49g1223 Tub 7e-25 CL0395