Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1220 ATGGCGAACCTCTCAGAGACCCATGCTTGTGCGCCTTCCACAGAACGTGGTCGGGGTATCCTCATTTCCGGCGACCCTAAATCCAACAACATTCTATACTGCACCGGGCGATCCGTCATGATCCGCAACCTCGATAACCCACTTCAGGTTTCCGTTTATGGAGAGCATGGCTACCCTGTCACGGTGGCACGGTACTCTCCCAACGGTGAATGGATTGCTTCAGCAGATGTCTCCGGCACCGTTCGGATCTGGGGCACCCATAACGATTTTGTTCTTAAGAATGAGTTCCGGGTCCTTTCGGGTCGGATAGATGACCTTCAGTGGTCTGCCGACTGTTTGAGGATCGTCGCTTGTGGGGAAGGCAAAGGGAAGTCATTTGTTCGTTCTTTTATGTGGGATTCAGGAAGCACTGTTGGGGATTTTGATGGTCATTCACGGCGAGTTTTAAGTTGTGCATTCAAACCAACAAGGCCCTTTCGTATTGTCACATGTGGGGAAGACTTTTTGGTGAATTTTTATGATGGTCCTCCATTCAAGTTCAACATGTCCATCAGGGTCCATTCAAATTTTGTGAATTGTGTTAGATTTTCTCCTGATGGAACCAAATTCATAACTGTGAGTTCGGATAGAAAGGGTATCATATATGATGGGAAGAGTGGGGACAAACTTGGCGAGTTGTCTGCAGATGGTGGCCACAAGGGCAGCATATATTGTGTAAGTTGGAGTCCTGACAGTAAACAGGTGCTTACTGTGTCGGCTGATAAATCTGCAAAGATCTGGGATATTCTTGAGGATGGAAGTGGAAGTTTAAATAAGACTTTATCGAGTTCTGAATCTAGTGGGGTGGAGGATATGCTTGTTGGTTGTCTTTGGCAGAATAATCATCTTCTCACTGTCTCCCTTGGTGGCATGATTAATTTATATTCGGCAACAGATTTAGATAAAATTCCTATATCATTATCTGGCCACATGAAAAATGTAGCTCTTTTAACTATACTCAACAAAAGCGAAAAGATGCTCTTGTCATGTAGCTATGATGGAGTGATCTTAAAATGGATTGTAGGCATTGGTTGCTGTGGTAAATTAGACAGTAAACAATTTGGATTAATTAAATTGTTTGCAGCCGGTGAGGAAGAAGTCATTACAGCTGGATTTGACAACAAGGTATGGAGGGTTCCTTTGGAAGGGGCTAATTTCAGAGCTCCTGAGCAAATTGATGTTGGCAGTCAGCCAAAAGACTTGAGCCTTGCCCTTGATTCTCCTAAACTCGCTTTGGTAGCAATTGAATCTGGGTTTGTTTTGCTTAATGGTTCAGAAATTGTCGCAACTCATAACCTGGGCTTCACTGTGACTGCATCTGCAATTTCACCTGATGGAAGTGAAGCAATTGTAGGTGGGCAAGATGGTAAATTGCATATATATTCTGTCTCAGAAAATACACTTACAGAAGAGAAAGTCCTTGAAAAGCACCGGGGTGCTATCAGTGTGATAAAATATTCTCCAGATGTCACCATGTTTGCTTCAGCTGACTTGAATCGTGAAGCTGTTGTTTGGGACCATGACTCTAAAGAGGTGAAGCTTAATAACATGTTATTTCACACTGCACGTATTAACTGCCTGGCTTGGTCACCTGATAACACCCTCATAGCTACTGGGTCACTTGATACATGCGTCATCATATATGAAATTGGGAAGCCAGCTTCAAGCCGCAGAACCATAAAAGCAGCGCATTTAGGTGGAGTCTACGGGTTGACTTTTATTGATAATGATTGCGTGGTCAGTTCTGGAGAAGATGGCTGTATTCGTGTTTGGAAATTGGCTTCGGAATAA 1830 0.4366 MANLSETHACAPSTERGRGILISGDPKSNNILYCTGRSVMIRNLDNPLQVSVYGEHGYPVTVARYSPNGEWIASADVSGTVRIWGTHNDFVLKNEFRVLSGRIDDLQWSADCLRIVACGEGKGKSFVRSFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYDGPPFKFNMSIRVHSNFVNCVRFSPDGTKFITVSSDRKGIIYDGKSGDKLGELSADGGHKGSIYCVSWSPDSKQVLTVSADKSAKIWDILEDGSGSLNKTLSSSESSGVEDMLVGCLWQNNHLLTVSLGGMINLYSATDLDKIPISLSGHMKNVALLTILNKSEKMLLSCSYDGVILKWIVGIGCCGKLDSKQFGLIKLFAAGEEEVITAGFDNKVWRVPLEGANFRAPEQIDVGSQPKDLSLALDSPKLALVAIESGFVLLNGSEIVATHNLGFTVTASAISPDGSEAIVGGQDGKLHIYSVSENTLTEEKVLEKHRGAISVIKYSPDVTMFASADLNREAVVWDHDSKEVKLNNMLFHTARINCLAWSPDNTLIATGSLDTCVIIYEIGKPASSRRTIKAAHLGGVYGLTFIDNDCVVSSGEDGCIRVWKLASE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1220 609 CDD WD40 56 352 - -
Lele49g1220 609 FunFam Actin-interacting protein 1 338 606 - -
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Lele49g1220 609 SUPERFAMILY WD40 repeat-like 25 352 IPR036322 GO:0005515
Lele49g1220 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Lele49g1220 609 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Lele49g1220 609 Pfam WD domain, G-beta repeat 223 261 IPR001680 GO:0005515
Lele49g1220 609 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Lele49g1220 609 Pfam WD domain, G-beta repeat 576 605 IPR001680 GO:0005515
Lele49g1220 609 Gene3D - 11 339 IPR015943 GO:0005515
Lele49g1220 609 SUPERFAMILY WD40 repeat-like 378 608 IPR036322 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
Lele49g1220 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 606 - -
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Lele49g1220 609 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Lele49g1220 609 Gene3D - 8 605 IPR015943 GO:0005515
Lele49g1220 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 524 562 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Lele49g1220 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Lele49g1220 609 FunFam Actin-interacting protein 1 11 337 - -
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Lele49g1220 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1220 Lele-ChrLele49 8171710 8175283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1220 184 508 Eukaryotic Initiation Factors Gene Family AT2G46290 20.354 6.23e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1220 49 8171710 8175283 Lele51g1238 51 8194346 8197926 hybridization
Lele49g1220 49 8171710 8175283 Lele52g1576 52 19645877 19649454 hybridization