Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1197 ATGGACGACCAAGTTGTTCAGCGCGTCTTCCATGAAGGAGGCCGCGACTACTATCAACAACAGCCTTCTACATCATCGTCTTCCTCCTCCATCCTTCAATCTCTACCTCTCCATGTGTCCTTTGATCATGGCTATTATTTGTTAGTAAAATCTATCCAAGAACTTCGAGAGAAAAAAGAGGGTCTTGTTACAATTGGCATTGGTGGTCCAAGTGGTTCTGGTAAATCAAGCTTAGCAGAGAAGGTGGCATCTGTTATTGGTTGCACTGTTATATCGATGGAGAATTATCGCAATGGAATTGATGAAGGGAATGATTTGGATTCTATAGACTTTAATGCGTTGGTCAAGAATCTTGAGGATTTGACGAAAGGCAATGATACACTGATTCCTGTGTTTGACTATCAACAAAAGAGACGTGTTGGATATAAAGCAATAAAGAGTGCTTCGTCAGGGGTGGTAATAGTTGATGGTACATATGCTCTACATGCAAAACTGCGGTCTTTGCTAGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGTATTTTCCCATTGTTTCGGAAGCACATTGAACCAGATCTTCATCATGCGCAGATCAGAATTAATAACAGCTTTGTTTCATCATTTAGAGAAGCCATCTACAAGGTGAAATGCAGAAGTGAGTCTCCTGATGGACATTTGGGTTCTGCCTTTCAACAAGATCAAGCCCAAACAGACAATTGTATAGAGATGTATCTTAGACCTCCTTCAGCTAGCGAAGAAGCAACGATTAATGATTGGATCAAGGTGCGGCAATCTGGAATTAGATATTATCTTTCTCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGACCAAAGGCTGAGTTTGAGGTGGGGCGAATGACATTAGGGGGGTTGCTTGCTCTGGGTTACTCTGTTGTTGTTAGCTATAAACGTGCATCTACAACAGTCAGTAATGGCAATGTTTCTGTGTCTTTTGAAACCATTGATGCTCTGGGCGAGACATACATGGTGCTGAGGGGAACAAATAGGAAAACAGTTGGAACAGAAGCATTAAAGATGGGTATAAGTGGCCCTTGGATCACTAAATCATACCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGTACACCTCCACTTGTGTCTAATCCACCTATGTCTGGTAATCCAGAAAGAGAAATTGTTGCACCAAAGCCAATCCGAGTTACCCCTGACCTTGTAACTGGAATTGAGGATTTATCTCAGCCATGGACTCGATCCCCAAGAAAGTCCAAAATGGACCCTGTCATAGCAACTTGGCGTTTTATATCTTCAGATTCATCTCGGATAGACAACACAGTACTAGACTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGATACTATGAGGCTTGCTCCAATGCCTGATTCCTATGACCTGGATAGGGGATTGCTTTTGGCCATTCAAGCAATACAGGCTTTGTTGGAGAAGAAAGGAGTTCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGATCTGGAAAGACTAGTTTGGCCCATAAAATGGCAAATATCATTGGTTGTGAGGTAGTTTCTCTGGAAAGCTATTATAAACGAGTAAAGGATTTTAAATATGATAACTTCAGCTCACTTGATCTGGCTTTGCTATCAAAGAATATTGATGACATACGAAATGTTCGGAGAACAAAAGTTCCTATATTCGACCTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTTTGCATCCTGCTATCCGAAAATCTCTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATATCTCGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATGTCCCAAAATGAGATTATGATGACAGTATTTCCTATGTTCCAGCTGCACATTGAACCACATCTTGTCCACGCACATCTTAAGATAAGAAACGACTTTGACCCTGTTCTTTCCCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAGGTAGCTTATCAAGATATTCTTACGATTCTTGATCCAGCAAAATTTTGCAGTTCTGTTCAAAAGTTCATTGATATATATTTAAAGCTTCCTGGGATCCCCTCTAACGGACAATTGACAGAGGGTGATTGTATAAGAGTCAGAATATGTGAAGGAAAATTTGCTTTATTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATCCAGCCCAAAGTGGATTTTGATATTGGCATTAGTACAGTTGCAGGGCTTCTCAATCTTGGGTATCAGGCAGTAGCATATATTGAAGCATCTGCGTTCATTTACCAAGATGGAAAGATTCTGATTGAGGTTGACCATCTACAAGATGTCTCCGGTCCATACATTCAGATTAAGGGTGTTGATAAGGATGCGGTGGCAGCAGCTGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAAAGTTATCTTCAAATAATTTTGGAAAACCTACCTGCACTGGAAAGAACTTTTGGTGGCATTCACTCTCAGCAATCTGCGAGGATGCAAGAAATTGTTGAGTTTATTCAATCTCAGGGGAGCAGCTTAGCATCAGAATGCTCACCAAGCAGAGGGGCGTCACCAATTGAAGGGATTATAGAGGAGATGCAAGCCAGGATTAAAAGGCTAGAACGGTGGCTTACTGTAAATACGGTTTTATGGACATTTCTGATGTCTGCTCTGGTGGGTTATTCACTATACCAAAGGAAGCGTCAATGA 2883 0.4089 MDDQVVQRVFHEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTIGIGGPSGSGKSSLAEKVASVIGCTVISMENYRNGIDEGNDLDSIDFNALVKNLEDLTKGNDTLIPVFDYQQKRRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDGHLGSAFQQDQAQTDNCIEMYLRPPSASEEATINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYSVVVSYKRASTTVSNGNVSVSFETIDALGETYMVLRGTNRKTVGTEALKMGISGPWITKSYLEMILERKGVPRLSTPPLVSNPPMSGNPEREIVAPKPIRVTPDLVTGIEDLSQPWTRSPRKSKMDPVIATWRFISSDSSRIDNTVLDFSHEATTDPSSFRDTMRLAPMPDSYDLDRGLLLAIQAIQALLEKKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKRVKDFKYDNFSSLDLALLSKNIDDIRNVRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPAIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGCFMSQNEIMMTVFPMFQLHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILTILDPAKFCSSVQKFIDIYLKLPGIPSNGQLTEGDCIRVRICEGKFALLIREPIREGNFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVDKDAVAAAGSMLKLDGSYTTKSYLQIILENLPALERTFGGIHSQQSARMQEIVEFIQSQGSSLASECSPSRGASPIEGIIEEMQARIKRLERWLTVNTVLWTFLMSALVGYSLYQRKRQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1197 960 CDD UMPK_like 78 226 - -
Lele49g1197 960 SMART AAA_5 524 668 IPR003593 -
Lele49g1197 960 SMART AAA_5 61 211 IPR003593 -
Lele49g1197 960 SUPERFAMILY CYTH-like phosphatases 733 867 IPR033469 -
Lele49g1197 960 Pfam Phosphoribulokinase / Uridine kinase family 107 223 IPR006083 GO:0005524|GO:0016301
Lele49g1197 960 Pfam Phosphoribulokinase / Uridine kinase family 527 692 IPR006083 GO:0005524|GO:0016301
Lele49g1197 960 Gene3D - 63 242 IPR027417 -
Lele49g1197 960 CDD UMPK_like 527 695 - -
Lele49g1197 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Lele49g1197 960 PRINTS Uridine kinase signature 525 542 - -
Lele49g1197 960 PRINTS Uridine kinase signature 552 563 - -
Lele49g1197 960 PRINTS Uridine kinase signature 646 656 - -
Lele49g1197 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 695 IPR027417 -
Lele49g1197 960 Gene3D - 524 701 IPR027417 -
Lele49g1197 960 Gene3D - 712 872 - -
Lele49g1197 960 PANTHER URIDINE KINASE 11 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1197 Lele-ChrLele49 7949558 7966112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1197 520 661 PRT Gene Family AT1G55810 25.974 7.18e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1197 49 7949558 7966112 Lele49g1197 49 7949558 7966112 ECH
Lele49g1197 49 7949558 7966112 Lele51g1218 51 8017462 8020578 hybridization
Lele49g1197 49 7949558 7966112 Lele52g1598 52 19873155 19884982 hybridization