Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1150 ATGGCAGAAACGTGCGGAAGCTGTAGATCTTGGTTCGACGATATTTACTGGAGCCATTTCAAATTCATGCATTTTGCACTGCGTCTCCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAAGGTTTTCAGATAGCATGAAAAGGAAATTGCCAGATAATGTGACCCTTAAAGGTCCTGGTGGCGCTGAGTTGAATGTCAGATTGTCATTTAGAGATGATATATTGTACTTCACGCATGGTTGGCAACAATTTGCACAAGATCACTTTTTGGAAGAGAATGATCTCCTGATCTTCAAGTACAATGGCGAATCACAGTTTGATGTTCTAATATTTGACCAGAAGAACTTATGTGAGAAGGTGTCTTCTTATTTTGTTCGGGACAGCGGGCAAACAAATAAGAGAAAGACAGATAACTGGGTGGAAGAAGAAAATATCCCTTCAAATATCGATGTCAAAGTGTCTTCGCCTGAGAAGAAATCTGCTCGTGGCAAAAGTGAAAAGACTCGTAAAGCTACTGTGGAATCCACCCCTGCCCAGCAAACTAAGCGGAGAGGAAGATCTAAGGGATCTAATGCGCATGCTGGAGAAATTGAATGGATTCCGGATGCTGAACCTGTATCCACGAGCAGAAATAAGATGGTTGAAATAGTGGATGCTTCAAGCAGAAGGGCTATCATAGAGAATGCGAAAAAGAATACCCTCGAATTGGCTCAAGCAGAATGTCCCACAGATGGATTCTATGTAGTCATGCGACCCTCGCATGTATTGGGGAAATTCTATATGACAATCCCTACGAAGTGGATGACAGAGCATTTTCCTCCACAATCTGAAGATGTGATATTATGTGTGGGAGAGAGCGAATGGCCTGTTAAATACACCTTCGAAGCTAATCGCCGGAGTGGTGGACTCACCGGTGGGTGGAAACAGTTTGTGCTGGACAATAACCTGCGAGAATTCGATGTTTGTGTGTTTAACCAAACTCGTTTAGGCAAGAAGCCACTGACCCTTGAAGTGAAAATATTCAGAGTTGATGTGTAG 1041 0.4313 MAETCGSCRSWFDDIYWSHFKFMHFALRLPPGFDQHLALPKRFSDSMKRKLPDNVTLKGPGGAELNVRLSFRDDILYFTHGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDQKNLCEKVSSYFVRDSGQTNKRKTDNWVEEENIPSNIDVKVSSPEKKSARGKSEKTRKATVESTPAQQTKRRGRSKGSNAHAGEIEWIPDAEPVSTSRNKMVEIVDASSRRAIIENAKKNTLELAQAECPTDGFYVVMRPSHVLGKFYMTIPTKWMTEHFPPQSEDVILCVGESEWPVKYTFEANRRSGGLTGGWKQFVLDNNLREFDVCVFNQTRLGKKPLTLEVKIFRVDV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1150 346 Pfam B3 DNA binding domain 247 343 IPR003340 GO:0003677
Lele49g1150 346 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Lele49g1150 346 MobiDBLite consensus disorder prediction 156 172 - -
Lele49g1150 346 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 345 IPR044837 -
Lele49g1150 346 SUPERFAMILY DNA-binding pseudobarrel domain 20 114 IPR015300 -
Lele49g1150 346 Gene3D - 225 345 IPR015300 -
Lele49g1150 346 SMART B3_2 247 345 IPR003340 GO:0003677
Lele49g1150 346 SMART B3_2 24 115 IPR003340 GO:0003677
Lele49g1150 346 ProSiteProfiles B3 DNA-binding domain profile. 247 345 IPR003340 GO:0003677
Lele49g1150 346 CDD B3_DNA 32 113 IPR003340 GO:0003677
Lele49g1150 346 Gene3D - 18 118 IPR015300 -
Lele49g1150 346 CDD B3_DNA 247 343 IPR003340 GO:0003677
Lele49g1150 346 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Lele49g1150 346 MobiDBLite consensus disorder prediction 151 205 - -
Lele49g1150 346 SUPERFAMILY DNA-binding pseudobarrel domain 247 335 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1150 Lele-ChrLele49 7610426 7614004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1150 1 343 REM Transcription Factor Family AT4G33280 35.156 5.36e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele49g1150 B3 2.9e-15 CL0405