Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1109 ATGGACCAACAAGTTCTTGTAGATGAGAACTTTCCACTCTTCTCCAAGTCTCGTAAACCCTCAAAAAACCACTTGCCAGCTGCCCCAACTGCTACAGCCACCGATGTTGTTGCCACCAAAGATATTAACTTTGATAACCAACACCTTGGAAAGTCAGATGACACGGATCTTGATTTCACCAATCCTACTACTTTTGCGGAGCTAGGACTTGCCGAATGGGCTGTGAAGACTTGCAAGGAGCTCGCAATTCGCAAGCCTCGACAGGTCCAATTACATTGCATCCCGAAGATTCTAGATGGCTGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCAGCATTTGCTCTACCAATTCTTCACCGACTGGGGGAGCATCCTTTTGGGGTTTTTGCTTTGGTTCTGACGCCAACAAGGGAGTTGGCATATCAACTAGCAGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCTGTGGTGGTTGGAGGGATGGATATGTTGCAACAAGCCAAGACTTTAACATCCAGGCCACATGTTGTGATTGCCACACCAGGAAGGATCAAGGTTTTGCTCGAGGATAATCCTGATATTCCTCCAGTTTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTTCTTGATGTCAGCTTTCAGGAGGATTTGAAATCGATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTTTTTTCTGCAACTACGACAAGTAATCTACAGAAGCTGCGTGAGCGTTACCAAGACAAGCTCTATGTCTATGAGGCCTATCAAGGCCTGAAAACTGTAGAGACGCTTAAGCAACAAATTATATTTGTCCCCAACAAAGTGAAGGAGGTTTATTTAATGCATTTATTGTCCAAAATGGAAGATATGGGCATTCGATCTGCCATTGTTTTTTTCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTACTCGATCAAGAAGCTGCAGCTCTCTATTCGTTCAAATCACAGTCTCAGAGACTTGAAGCACTTAATCAATTTAAATCAGGAAAGGTTTCTTTACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACTGTTGATCTAGTAATCAATTATGATGTCCCAAGGTTTCCGAGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGATTGGCAGTGAGCATTGTTACCCAGAATGACATTCATCTCGTTCATGAAGTAGAATCTCTTCTTGAAAGGCAACTTGAGTTGGTGGAATACAAAGAGACTGAGGTGCTTTCTCGGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCCGAAATGAAAATGTTGGATGATGGCTTTGAGGATAAAGCAAAAGAGCGGCAAAAGCAGAAACTGAAAATGTTGGCAGAAAAAGGATTGTTAAAGAAAAGGAGCAAAAAGAGGAAAAGAAATAAAGGAGTCAAGGAAGAATGGAAGGAAAATGAAGAGGAAGTGGAAACCTTACCAGATAAAAAATGA 1548 0.4251 MDQQVLVDENFPLFSKSRKPSKNHLPAAPTATATDVVATKDINFDNQHLGKSDDTDLDFTNPTTFAELGLAEWAVKTCKELAIRKPRQVQLHCIPKILDGCHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLQQAKTLTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVSFQEDLKSIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYVYEAYQGLKTVETLKQQIIFVPNKVKEVYLMHLLSKMEDMGIRSAIVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQSQRLEALNQFKSGKVSLLLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDIHLVHEVESLLERQLELVEYKETEVLSRMKKVFSAKNVAEMKMLDDGFEDKAKERQKQKLKMLAEKGLLKKRSKKRKRNKGVKEEWKENEEEVETLPDKK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1109 515 CDD DEADc_DDX49 65 268 - -
Lele49g1109 515 Pfam Helicase conserved C-terminal domain 306 402 IPR001650 -
Lele49g1109 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 441 IPR001650 -
Lele49g1109 515 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 37 507 - -
Lele49g1109 515 SMART helicmild6 321 402 IPR001650 -
Lele49g1109 515 Gene3D - 34 267 IPR027417 -
Lele49g1109 515 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Lele49g1109 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Lele49g1109 515 MobiDBLite consensus disorder prediction 496 515 - -
Lele49g1109 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 419 IPR027417 -
Lele49g1109 515 SMART ultradead3 82 282 IPR014001 -
Lele49g1109 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Lele49g1109 515 CDD SF2_C_DEAD 279 411 - -
Lele49g1109 515 MobiDBLite consensus disorder prediction 478 515 - -
Lele49g1109 515 Gene3D - 274 511 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1109 Lele-ChrLele49 7333293 7338627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1109 64 415 Eukaryotic Initiation Factors Gene Family AT3G13920 32.869 3.04e-53 184