Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1098 ATGTTTTGGTCTGTTGGTGATTCAACGAGTATACATCGTTATACTCTACGGTACCCGGGACAACCCCAGATGATAGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGACGACTTTCTGGAAGTAATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTCAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTACCAAAAGGATACGAAATCACGCTTCCACTGGAGGACGAACAGCCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATTAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCATGAGGTCTGCTCATTCCTTGTGCTGTCTGTTTCCATTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACCCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCTTTGCTTCGGCACAGCAGCTCTGCAATGGCAGCAGCTGGGCACGTTGACCAGAGGGAAAGGACCATATCCTCACATGACCGTGACCATAGTGTTGATCATCCTGATCCAGATGACAGAGGTTTTATGAGGAGTCGTGGTGAGAAGGAAAAGGACCGTAGGGAAGATAGAGACAGGAAAGAGCGGGAACGGGATGATAGAGATTATGAGCATGATAATAGTGGGGACTACAAGATGCGGAATTTCCCCCACAAAATGAAACATGGTAGCAGGGGTGATGATTTTGGCGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAACATTTTGGTCTGCGCAGTATGTCATCGCCTTGTGATGATGTGAAAAGTATATATAGTCAAGAGTTCGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTGCATATCTATAGTAGGGAAATAATTACGCAACAAGAATTGCAATCATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTATGGAGGGCTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGAATCCTTATGGAATGAAGGATATGCATCAAAGTCAGTGAAGTCAGAAGACCGGGATAGAGATAGAGATCGTGGTAGGGATGATGAGGTTAAAGAAAGGGGGAGATCTGCTGCCATTACCAACAAGGATGTTTCAGGTTCTAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTAGCTTGGTGCTGACGTAGTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGACTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAACTTGATATGCTGTTAGAGTCTGTGAATACGACAACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAAGCAGAAAGTCCAATCCGAGTTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGGTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTAAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAGTTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGAAGGCCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATCTGTATCAGCTAATAAAATATTCATGTGGAGAAGGAGGACTTAATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACTAGGAACATCTACAAATGGGACCATCTCTGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAGGCTGAAAGAGAAGAAGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCGGTTTACAGTGATGCTGTTTTGGAGGCAATGAGTAAAGGAAAGGACGGTGGTATGATTCATCAATACCAAAATAGACATGGAGAAGAAGTTTGTGGTGAAGCTGGAGGGGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGGGATGTTTCTGGTAGTGAGTCTGCTGATGGGGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAGCACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCGCTATTGCCATTTTCAGAACGCTTTCTACTAACTGTAAAGCCTCTGGCAAAGTATGTTCCTGCAGCTTTGCCTGAAAAAGAAGGGAATTCTCAGATTTTTTATGGAAACGACTCCTTTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAAGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTATAGTTTACTGGATGGTTCTTCCGACAATACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTATATCATGAAAATGACCGTGTTCTTCTTCACGACGAGAACGTATATCGAATTGAATGTTCATCTACACCGTCCCGATTATCTATTCAACTGATGGACTATGGACATGACAAACCAGAATTGACTGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCAGGGATTTTCCTGAAGAGGAATAAACGCAGATACGCAAGTAGTGATGAATATTCAAGCCAGGCCTTGGAAGGAGTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATGAGAAGGAAAAGGAAAACTTTGCATCAGAACGGTTCATGCCATGAACAGGCAAAGTCTTCAAACATTTGTCCAAGCAGAGCACAGCGGTTTCGCAGATTGTTTCCCATTACATGA 3567 0.409 MFWSVGDSTSIHRYTLRYPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVCSFLVLSVSILFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRHSSSAMAAAGHVDQRERTISSHDRDHSVDHPDPDDRGFMRSRGEKEKDRREDRDRKERERDDRDYEHDNSGDYKMRNFPHKMKHGSRGDDFGAEPLHQGGDADEHFGLRSMSSPCDDVKSIYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITQQELQSLVGDLLGKYPDLMEGFNEFLARCEKNESLWNEGYASKSVKSEDRDRDRDRGRDDEVKERGRSAAITNKDVSGSRMSILSSKDKYMYKPINELDLSNXLGADVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNTTTKRVEELLEKINNNIIKAESPIRVEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEVKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEGGLNLPSSEGGDSTRLGTSTNGTISEGTKVQRYQEESVGHLKAEREEGELSPNGDFEEDNFAVYSDAVLEAMSKGKDGGMIHQYQNRHGEEVCGEAGGENDADADDEGEESHQRSLEDSENASENGDVSGSESADGECSREEHEDGEHKAESEGEAEGMADANDVDGDGSLLPFSERFLLTVKPLAKYVPAALPEKEGNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENDRVLLHDENVYRIECSSTPSRLSIQLMDYGHDKPELTAVSMDPNFSAYLHSDFLSVVPDKKEKSGIFLKRNKRRYASSDEYSSQALEGVQVSNGLECKIACSSSKVSYVLDTEDFLFRMRRKRKTLHQNGSCHEQAKSSNICPSRAQRFRRLFPIT 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1098 1188 Pfam Paired amphipathic helix repeat 352 396 IPR003822 GO:0006355
Lele49g1098 1188 Pfam Paired amphipathic helix repeat 139 191 IPR003822 GO:0006355
Lele49g1098 1188 Pfam Paired amphipathic helix repeat 53 97 IPR003822 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 704 723 - -
Lele49g1098 1188 MobiDBLite consensus disorder prediction 417 440 - -
Lele49g1098 1188 ProSiteProfiles PAH domain profile. 30 100 IPR003822 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 227 316 - -
Lele49g1098 1188 SUPERFAMILY PAH2 domain 30 99 IPR036600 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 777 867 - -
Lele49g1098 1188 MobiDBLite consensus disorder prediction 833 855 - -
Lele49g1098 1188 ProSiteProfiles PAH domain profile. 330 399 IPR003822 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 734 756 - -
Lele49g1098 1188 SMART hdac_interact2seq4b 459 548 IPR013194 -
Lele49g1098 1188 FunFam Paired amphipathic helix SIN3-like protein 115 194 - -
Lele49g1098 1188 ProSiteProfiles PAH domain profile. 116 194 IPR003822 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 213 322 - -
Lele49g1098 1188 SUPERFAMILY PAH2 domain 331 397 IPR036600 GO:0006355
Lele49g1098 1188 FunFam Paired amphipathic helix protein SIN3 329 401 - -
Lele49g1098 1188 MobiDBLite consensus disorder prediction 417 441 - -
Lele49g1098 1188 MobiDBLite consensus disorder prediction 734 749 - -
Lele49g1098 1188 MobiDBLite consensus disorder prediction 780 794 - -
Lele49g1098 1188 SUPERFAMILY PAH2 domain 112 193 IPR036600 GO:0006355
Lele49g1098 1188 MobiDBLite consensus disorder prediction 706 723 - -
Lele49g1098 1188 FunFam Paired amphipathic helix protein Sin3 36 98 - -
Lele49g1098 1188 Pfam Sin3 family co-repressor 474 541 IPR013194 -
Lele49g1098 1188 Gene3D Paired amphipathic helix 114 195 IPR036600 GO:0006355
Lele49g1098 1188 PANTHER SIN3B-RELATED 30 1046 IPR039774 GO:0003714
Lele49g1098 1188 MobiDBLite consensus disorder prediction 806 820 - -
Lele49g1098 1188 Gene3D Paired amphipathic helix 328 401 IPR036600 GO:0006355
Lele49g1098 1188 Pfam C-terminal domain of Sin3a protein 902 1148 IPR031693 -
Lele49g1098 1188 Coils Coil 517 541 - -
Lele49g1098 1188 Gene3D Paired amphipathic helix 36 98 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1098 Lele-ChrLele49 7210387 7218949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1098 26 135 WRKY Transcription Factor Family AT4G12020 50.909 2.36e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele49g1098 Sin3a_C 3.9e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1098 49 7210387 7218949 Lele49g1098 49 7210387 7218949 ECH
Lele49g1098 49 7210387 7218949 Lele51g1115 51 7323959 7332733 hybridization
Lele49g1098 49 7210387 7218949 Lele52g1156 52 8060083 8069733 hybridization