Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1065 ATGGCTCCCGCTGCTACTCAACTCCCCTGCGATTGTGACGGTGCTTGTATGATCTGCAAGACGAAGCCTGCAGAGGAAGAAAAACTGACATGCAAAACCTGTGCTTCTCAATGGCATGTCAACTGTCTCTCTCACCGTCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCCGATTGTGCTACCCCACCCTCCGATTTCCCTTCGGCGACCGTTGGCAAAGCCTTTCTTGATGGGGCCGGTGACTTGATGGCGAAGATCCGAGCGATTGAGGCCGATGATTCTCTGACCGAACATGAGAAAGCTAAGAAACGGCAACAACTAATGAGTGGGAAGGCTGTGTCGGAGGAAGACGAACGCGGTGGGAAGAAGCTAGTAAGTGACGGGAAGGACGTGTTGGTTATTCTTAACGGGACTCTGAACTGTTCCTTCTGTATGCAGTTGCCCGAAAGGCCGGTCACGACGCCATGTGGCCACAATTTCTGTCTCAAGTGCTTTCAGAAATGGATTGCACAAGGGAGACTAACATGTGCCAAATGTCGTAGTGATATCCCTTCTAAAATGGCAAGTCAACCACGCATAAATTCTGCACTTGTTATTGCTATCCGTATGGCCAAAGTATCGAATAACATAGGTGCAGGACAAACCTCTAGAGTTTATCAGTATTTGCATAACCAGGACAAACCTGACAAGGCTTATACTACTGAGCGGGCTCAGAGGCAAGGGAAATCAAATGCATGCAGTGGAAAGATCTTTGTTACTGTCCCTCAGGACCATTTTGGTCCGATACCTGCGGAGAACGATCCAGTGAGGAATCAAGGTGTGATGGTTGGTGAATGTTGGGAAGATAGACTTGACTGCCGGCAATGGGGTGCTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGTGCCCAATCAGTAGTTCTTTCCGGTGGTTATGTCGATGATGAGGATCACGGAGAGTATTTCCTTTATACTGGAAGTGGTGGTAGAGACTTGAGTGGAAACAAGCGAACAAACAAAATACAATCATTTGATCAGAAGTTTGAAAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTAAAAGGTTATCCAGTTCGAGTTGTAAGATCTCATAAAGAGAAGCGTTCCTCATATGCCCCTGAGCAAGGATTACGTTATGATGGTGTTTATAGAATAGAAAAGTGTTGGCGGAAACAGGGATCGCAGGGCTTCAAAGTTTGTCGGTACTTATTTGTCAGATGTGACAATGAACCTGCCCCATGGACAAGTGATGATCACGGAGATCGTCCCCGACTATTGCCAGAAATTCCTGAGTTGGAAGAGGCTACAGACTTAGTTGTAAGGAAGGAGGATCCATCATGGGCATTTGATGAGGAAGGATCTTGTTGGAACTGGAAAAAACCACCACCTCCTAGTCGAAAGCATGTGAAAAATATGGACCCCCAAGAGGTAAAACGGTCAAGGAGGGAAATAAGGAAAGCTCAAAATCTTTCAATCAGGGAAAGATTGCTGAAAGGATTTGGTTGCCTTGTCTGTAAAGAGGTTATGGTTACTCCTGTGACTACTCCCTGTGCTCATAATTTCTGTAAGTCGTGTTTGGAAGGTGCATTTGCTGGCAAGTCTTTTGTGAGAGAAAGAAGCAGGGGTGGAAGATCTCTTCGGTCCCAAAAGAACGTGATGAAATGCCCATCTTGCCCTACTGACATCTCTGATTTTCTCCAAAACATTCAGGTCAATACAGAATTGTTGGGCTTAATTGAATCGTTGAAAGCTGAGGCTCAAGAAGAAAATAGAGATGAAAGTGAGAATGAAGATGGAGCAGAGGAGGAAGAATGTGATGATGCTGAGGCTACAATGGATGATGAAGCTGAGGACGGCGATGATGTTGAGGCTACAATGGATGAAGATAAGGATACCTCGGTCGAGAAGCTTAAAGATTCAACTGAGGAATCTGACGATAGCAAACCACAGTCAAAAGAACTTGCAGTGGCCAATAGTGGAGCCAAGGATACTTGCAAAAGAAAGAGAGCTGATGCTGAAAAAGTGTCTCCCAAAGCCAAAGGTGGTAAACGTAAAAATAAAAAGAAGGCTGAGGATGATGATGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGCCACCAGACAATTAA 2172 0.4549 MAPAATQLPCDCDGACMICKTKPAEEEKLTCKTCASQWHVNCLSHRPETMAETLQWECPDCATPPSDFPSATVGKAFLDGAGDLMAKIRAIEADDSLTEHEKAKKRQQLMSGKAVSEEDERGGKKLVSDGKDVLVILNGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIAQGRLTCAKCRSDIPSKMASQPRINSALVIAIRMAKVSNNIGAGQTSRVYQYLHNQDKPDKAYTTERAQRQGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVMVGECWEDRLDCRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTNKIQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEQGLRYDGVYRIEKCWRKQGSQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRLLPEIPELEEATDLVVRKEDPSWAFDEEGSCWNWKKPPPPSRKHVKNMDPQEVKRSRREIRKAQNLSIRERLLKGFGCLVCKEVMVTPVTTPCAHNFCKSCLEGAFAGKSFVRERSRGGRSLRSQKNVMKCPSCPTDISDFLQNIQVNTELLGLIESLKAEAQEENRDESENEDGAEEEECDDAEATMDDEAEDGDDVEATMDEDKDTSVEKLKDSTEESDDSKPQSKELAVANSGAKDTCKRKRADAEKVSPKAKGGKRKNKKKAEDDDDGNDSPASPLHLPPDN 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1065 723 SUPERFAMILY PUA domain-like 245 442 IPR015947 -
Lele49g1065 723 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Lele49g1065 723 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 619 IPR045134 -
Lele49g1065 723 SUPERFAMILY RING/U-box 140 189 - -
Lele49g1065 723 MobiDBLite consensus disorder prediction 604 641 - -
Lele49g1065 723 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Lele49g1065 723 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 90 210 - -
Lele49g1065 723 ProSiteProfiles Zinc finger RING-type profile. 515 571 IPR001841 -
Lele49g1065 723 SUPERFAMILY FYVE/PHD zinc finger 8 65 IPR011011 -
Lele49g1065 723 MobiDBLite consensus disorder prediction 675 692 - -
Lele49g1065 723 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Lele49g1065 723 ProSiteProfiles Zinc finger PHD-type profile. 13 64 IPR019787 -
Lele49g1065 723 Pfam SAD/SRA domain 273 422 IPR003105 -
Lele49g1065 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 624 IPR013083 -
Lele49g1065 723 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Lele49g1065 723 SMART ring_2 16 61 IPR001841 -
Lele49g1065 723 SMART ring_2 143 181 IPR001841 -
Lele49g1065 723 SMART ring_2 515 571 IPR001841 -
Lele49g1065 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 63 IPR013083 -
Lele49g1065 723 Coils Coil 585 617 - -
Lele49g1065 723 ProSitePatterns Zinc finger PHD-type signature. 10 61 IPR019786 -
Lele49g1065 723 SUPERFAMILY RING/U-box 509 597 - -
Lele49g1065 723 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Lele49g1065 723 MobiDBLite consensus disorder prediction 598 723 - -
Lele49g1065 723 CDD RING-HC 143 181 - -
Lele49g1065 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 208 IPR013083 -
Lele49g1065 723 MobiDBLite consensus disorder prediction 642 663 - -
Lele49g1065 723 SMART PHD_3 15 62 IPR001965 -
Lele49g1065 723 SMART G9a_1 266 423 IPR003105 -
Lele49g1065 723 Pfam RING-type zinc-finger 515 569 IPR027370 -
Lele49g1065 723 Gene3D - 242 439 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1065 Lele-ChrLele49 6858709 6863004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1065 6 601 C2H2 Transcription Factor Family AT5G39550 61.296 0.0 739