Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1058 ATGATCCCAACATCAAATGAGCCCGATCGCCGGATTCTGACCTTTTCGGCAGTTCATCCTTGGGGAAGTGTTTCTCTTTCCACACTTATCACTTCTTTATTCACTATCTCTCGTAGGATTTGCAGTTTCAAATCCAAAGTTTTCTCCAGTAACAAGAAAAATGCCAGAAAAGCCATTCGTATGATTGAGGTTCTTCAGATTTTTCTGGAAGAGATCCGCGACCAGCAGCAATGGAGTTTTCCGGATTCTGTAATCCTCAGCTTGTCAGAGCTCCATTTGACTTTCCAGAAGCTTCAGTTCCTCCTTGAAGACTGCAATCGTGAAGGCTCTCGGCTATATATTCTCATGGAGTCGGATCGGGTCGCGACCCATTTCCAGGTCTTATCTAGATCCGTAGTCACGGCTCTGGATATCTTCCCTTTCAGCTCCATAGAAATCTCAGAAGAAGTCGAAGAGCAGGTTGAATTGATACTGAAGCAGGCACGAAAAGGTGATTTTGAAGTTGAGCCAGAAGACAAACGAGCCATTAAGGATGTTTTATCAACTTTGAATCAATTTGAGAACTCAATCACACCAAGTGAGAGTGATCTCAGATGGATTCTTGATCATATTGGGGTTCGAAGATGGAGTGAGTGTAACAAAGAAATCAAGTTTCTGGATACAGAAATTGGATATGAGCGAATGAAGAAAGAGGAAAGAAATATGGCTTTTTTGAGTAGTTTAATGGCGTTCATGAGTTACTGCAGATGCTTGGTGATTGAGGTTGTTGATCATGGAGAAGATGACCCAAAATCTGATTACAGCAAAGAAAGTGATGAGATTCTTCAGACTTGGTGCTTCAACCCAGATGATTTTCGATGTCCAATCTCTCTAGAAATCATGAATGATCCAGTGACAATAGAGACGGGTCATACTTATGATCGATCTTCGATTCTTAAATGGTTCAGCAGTGGAAGCCTCATATGTCCCAAGACAGGGAGAAACCTTAGGAGCATCGAACTGGTCCCTAATCTGGTGCTTCGCAGGTTAATTCATCAATACTGTGCTAAAAAGGGCATGCCCACGGCTGATCTGGGTCGGAGGAATAATCGTGATCGTGATAACAAAACCACTTGTCAGCCTGGAAGTTTGGCAGCTCAAGAAGCCATGAAAATGCTGGCAAGTTTTCTCAGTAACAAACTTCAAAACGAAGCAGAGGTTGAGAGAAACAGAGCTGCTTATGAGATTCGGGTTCTCGCCAAAAGAAACATCTTCAACAGGTCTTGTATTGTGGAATCTGGTATAATACCTTATGTGTTAAGGTTGTTGTCGTCATCGAGGAATCCAACAACACAAGAAAACGCCATAGCAGCTCTTCTGAACCTCTCAAAACACCCCAAAGGCAAAAGTATTATGGTTCTGAATGGGGGATTGGAATTGATTGTGAGTGTTTGTAAGAAAGGAATGAAGTTAGAATCTCGCCATCACGCCGCTGCTACGTTGTTTTACCTCGCTTTGGATGAGGAGAACCGAAGATTGATCGGGGAAGAGCCGGGAGCGATCCCATCTTTGATCAATCTACTCAAAGATGGCTCTGATAGAGGCAAAAAGAATGGCTTGGTTGCTATATATGGCCTCCTTTTTCGCTCTGAGAATCACAAGAGCGTGCTTGAAGCTAAGGCAATTCCATTGCTAGTTAGCATCTTAAGAACTTGTGAAAGAGAAGAATTAGTCACAGATTCATTAGCAGTACTGGCAAGTCTAGCTGAGACAAGTGCAGGAGCAATGGAAATCCTTGAAAATGGAGCTTTGAGTCCAACCATTGAGATTCTGAATTCTTCTTCAACAACTTCAAGAGTTGGGAAGGAGCAATGTTTGTCTTTATTGCTTTCTCTAGCAGTAAATGGAGGAGCAAATGTGGTTGCTCTTCTAGTGAAAAATCCTTCTCTAATGGGATCCTTATATTCCTTAATCAGTGAAGGCACATCTAGTGCAAGCAAAAAGGCCAGTGCTCTCATCAGGGTCCTCCATGATTTTTGTGAAAGGGGGCCCTATGGATTCAAGGCTTCAGTTCTTCCACAAGAACAATTCATTCACGTTTGGTGA 2085 0.4264 MIPTSNEPDRRILTFSAVHPWGSVSLSTLITSLFTISRRICSFKSKVFSSNKKNARKAIRMIEVLQIFLEEIRDQQQWSFPDSVILSLSELHLTFQKLQFLLEDCNREGSRLYILMESDRVATHFQVLSRSVVTALDIFPFSSIEISEEVEEQVELILKQARKGDFEVEPEDKRAIKDVLSTLNQFENSITPSESDLRWILDHIGVRRWSECNKEIKFLDTEIGYERMKKEERNMAFLSSLMAFMSYCRCLVIEVVDHGEDDPKSDYSKESDEILQTWCFNPDDFRCPISLEIMNDPVTIETGHTYDRSSILKWFSSGSLICPKTGRNLRSIELVPNLVLRRLIHQYCAKKGMPTADLGRRNNRDRDNKTTCQPGSLAAQEAMKMLASFLSNKLQNEAEVERNRAAYEIRVLAKRNIFNRSCIVESGIIPYVLRLLSSSRNPTTQENAIAALLNLSKHPKGKSIMVLNGGLELIVSVCKKGMKLESRHHAAATLFYLALDEENRRLIGEEPGAIPSLINLLKDGSDRGKKNGLVAIYGLLFRSENHKSVLEAKAIPLLVSILRTCEREELVTDSLAVLASLAETSAGAMEILENGALSPTIEILNSSSTTSRVGKEQCLSLLLSLAVNGGANVVALLVKNPSLMGSLYSLISEGTSSASKKASALIRVLHDFCERGPYGFKASVLPQEQFIHVW 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1058 694 Gene3D - 372 677 IPR011989 -
Lele49g1058 694 Pfam Neurochondrin 546 628 IPR008709 -
Lele49g1058 694 SUPERFAMILY RING/U-box 272 354 - -
Lele49g1058 694 SMART arm_5 500 541 IPR000225 GO:0005515
Lele49g1058 694 SMART arm_5 584 627 IPR000225 GO:0005515
Lele49g1058 694 SMART arm_5 415 457 IPR000225 GO:0005515
Lele49g1058 694 SMART arm_5 542 583 IPR000225 GO:0005515
Lele49g1058 694 SMART arm_5 458 499 IPR000225 GO:0005515
Lele49g1058 694 SUPERFAMILY ARM repeat 387 669 IPR016024 -
Lele49g1058 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 596 IPR000225 GO:0005515
Lele49g1058 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 470 IPR000225 GO:0005515
Lele49g1058 694 Pfam Armadillo/beta-catenin-like repeat 419 456 IPR000225 GO:0005515
Lele49g1058 694 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Lele49g1058 694 CDD RING-Ubox_PUB 285 326 IPR045210 -
Lele49g1058 694 FunFam RING-type E3 ubiquitin transferase 281 353 - -
Lele49g1058 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Lele49g1058 694 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Lele49g1058 694 PANTHER U BOX DOMAIN-CONTAINING 50 669 - -
Lele49g1058 694 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1058 Lele-ChrLele49 6809220 6811304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1058 1 694 U-box Gene Family AT1G10560 44.163 0.0 560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1058 49 6809220 6811304 Lele53g0954 53 19154958 19158988 CCT
Lele49g1058 49 6809220 6811304 Lele54g0934 54 15783285 15789403 CCT
Lele49g1058 49 6809220 6811304 Lele55g0519 55 3314740 3318743 CCT
Lele49g1058 49 6809220 6811304 Lele56g0505 56 3692020 3697252 CCT
Lele49g1058 49 6809220 6811304 Lele49g1058 49 6809220 6811304 ECH
Lele49g1058 49 6809220 6811304 Lele51g1070 51 6905409 6907493 hybridization