Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1048 ATGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTTCATTTCCTCCACGCCCACCTGGAGCTGTTAATATGCTTCCAGTATCACGCCCTCCTGTTGCAGGGATCCCTCCTGTTCGCCCTGTCATTCCCCCTGTGGTTAGACCAGTGGTTGCTCCTAGTATTACACCATCTGATAAACCGCAAACTACAGTTTATATTGGAAAGATTGCATCAACAGTGGAAAATGAATTTATGCTTTCTCTACTTCAGTTGTGTGGACCTATCAAGAGTTGGAAACGTCCTCAAAATCCAACGAATGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGTGTTCTCCGTGCATTGCGTCTGCTCAATAAATTGAATATTGATGGGCAAGAATTAACGGTCAATCCTAATGACGCAACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAAGGATACTCAGGCTGTCGGATCTGAGAAAGATGATGACAGTGCCCAACCTTCGAATGCAGGAGAGGATGGAAAGCCTGATGACTCAAAGAAAGAGGGCAGTAAGTCAGGGAACAAGGAAAATCACAATGTGACAAATCTCAGTATCATTACTGATGAAGACAGGGAAGCTGATAGAGAGGCCTCAGAGAAGATTACAAACATGATAGAGGAGAGACTGAAGACAAGACCTTTACCTCCACCTCCTGCACAGGCAGCTCCCGATGGCCCTGCAAACTTGGCTATGGAACAACCTTCAAAAGCAAGAGATGGAGACTCTGATGTAGATACAGCAAATAATGAAGCAGGTGATGAAAAAAATGACAAGGAGACATATAGTGAGAACAAACCAACCAGTGAACATGATAGGCCTGAGACCCCCGATAATAGAAGGCATGATGGGAGAAGCAGAGAAAGAGACCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGAGAACGCATTAGGAAAGAGAGGGAACAAAGGAGGAGGATTGAGGAGGCTGTGCGCCAGTATGAAGCATGCTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAACGTAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCAAGGAAGAGGTGGCGCAGAAGTGTGTTAGATGAGAAACGAAAGAAAAGATTGCGGGAAAAGGAAGAGGACTTGGTTGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGGGCTGAGGAGGATCAACAACGGAAGCAGCAGAGAGATGCACTGAGGCTATTTTCTGAGCATGTGAATAGTTGTGAAAAAAGTATGGCTACTGAGGATGTGACTACTCAAGCCAAAAACATTGTTACTGAACAAGACACTGTAGCTGACCATGGTTATGAAGGCCATATAGGTGATGGTAATCTACTAAATGGCATCAATGATGAATCAACCATAGCATCGGTTGCTGTTTCTGATACACGACAGAGTGGCAATGCCCCTGCTAAGAAGTTGGGTTTTGGTTTGGTTGGTTCTGGGAAAAGAACTACTGTTCCTTCTGTCTTCCATGAGGAGGAGGATGATGCACACAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTGCAGGCTGTTCAACCTACTGTTTCTGGGGCCCCTCCCCCAAATTTGGCTGCAGCTGCAGAATTTGCTAAGCGTTTATCCAATGCCAATATCAAGGAAGAGAAGGTAGATGGAGAGTGGGATAGAAGTAGGCGTTCTAGTGATAGGTCCAACTACCGAGATAGGAACAGGAATGATGAAGATAGCTCTTACAACAAAGATGAAAGCAGGGAAAAGATTTCTGATCGTGACAGGGATCGAGAACGTGGGTTGGAAAAACAGAAGAAATCAGATAACAAAAAGCTATTAGATGCGAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTATTTTCATATGAGATGAACTGGGCAGTGTATGACAAGCACCAGCTGCATGAAAGAATGAGACCCTGGATATCGAAGAAGATCACAGAGTTCTTGGGGGAAGAAGAAACGACATTGGTAGATTACATAGTTTCAAGCACGCAGGAACATGTGAAAGCATCCCAGATGCTGGAGCTGCTTCAATCCATTTTAGATGAAGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAGGGTAGAGACAGGCCTTGCTACGAGGTCAAAATCTTGA 2343 0.4366 MPRYPPPYGTMVRPSFPPRPPGAVNMLPVSRPPVAGIPPVRPVIPPVVRPVVAPSITPSDKPQTTVYIGKIASTVENEFMLSLLQLCGPIKSWKRPQNPTNGTPLSFGFWEFESAEGVLRALRLLNKLNIDGQELTVNPNDATKEYLEKYVKKKNENLQKDTQAVGSEKDDDSAQPSNAGEDGKPDDSKKEGSKSGNKENHNVTNLSIITDEDREADREASEKITNMIEERLKTRPLPPPPAQAAPDGPANLAMEQPSKARDGDSDVDTANNEAGDEKNDKETYSENKPTSEHDRPETPDNRRHDGRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAVRQYEACLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVLDEKRKKRLREKEEDLVDRQKEEEEIAEAKRRAEEDQQRKQQRDALRLFSEHVNSCEKSMATEDVTTQAKNIVTEQDTVADHGYEGHIGDGNLLNGINDESTIASVAVSDTRQSGNAPAKKLGFGLVGSGKRTTVPSVFHEEEDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGAPPPNLAAAAEFAKRLSNANIKEEKVDGEWDRSRRSSDRSNYRDRNRNDEDSSYNKDESREKISDRDRDRERGLEKQKKSDNKKLLDAKQLIDMIPKTKDELFSYEMNWAVYDKHQLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVETGLATRSKS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1048 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 135 IPR000504 GO:0003723
Lele49g1048 780 SUPERFAMILY RNA-binding domain, RBD 37 142 IPR035979 GO:0003676
Lele49g1048 780 CDD RRM_RBM25 64 147 IPR034268 -
Lele49g1048 780 MobiDBLite consensus disorder prediction 607 664 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 520 571 - -
Lele49g1048 780 SUPERFAMILY PWI domain 701 766 IPR036483 GO:0006397
Lele49g1048 780 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 780 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 162 349 - -
Lele49g1048 780 Coils Coil 267 287 - -
Lele49g1048 780 Coils Coil 311 357 - -
Lele49g1048 780 Gene3D PWI domain 659 776 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 162 197 - -
Lele49g1048 780 FunFam RNA Binding Motif protein homolog 659 775 - -
Lele49g1048 780 Pfam PWI domain 703 766 IPR002483 GO:0006397
Lele49g1048 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Lele49g1048 780 SMART pwi_2 696 769 IPR002483 GO:0006397
Lele49g1048 780 SMART rrm1_1 65 138 IPR000504 GO:0003723
Lele49g1048 780 Coils Coil 363 391 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 365 404 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 259 349 - -
Lele49g1048 780 Gene3D - 56 171 IPR012677 -
Lele49g1048 780 MobiDBLite consensus disorder prediction 545 566 - -
Lele49g1048 780 ProSiteProfiles PWI domain profile. 683 780 IPR002483 GO:0006397
Lele49g1048 780 MobiDBLite consensus disorder prediction 418 453 - -
Lele49g1048 780 MobiDBLite consensus disorder prediction 208 230 - -
Lele49g1048 780 Coils Coil 412 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1048 Lele-ChrLele49 6742210 6747706 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1048 49 6742210 6747706 Lele49g1048 49 6742210 6747706 ECH
Lele49g1048 49 6742210 6747706 Lele51g1064 51 6856040 6863543 hybridization
Lele49g1048 49 6742210 6747706 Lele52g1104 52 7496288 7503979 hybridization