Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1025 ATGTTGGGGGGCTACAAAGGAAATCCTGTTCTTCCTGTTTTCCTAGACGATGCTCACATGCAATATCAAACTAATGCAGCAAATCAACTGCAGTTGTTTGGAAACTTACCTGCTGGGTGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCCTATTAGTTCTATGGTTCGGCCAAGAAGACAAACTGGGGAAATAGATGACATGTCCAAGCAGCAAAGGCTTCAGGTTTCCTTAAATTACAACTTCTGTCACGATGAACCTGATCGATCAGCAAGTATTCCAAACCCAAACCCACACCCTGTGTCAACAGGATTGAGGTTGTCTTATGATGACGACGAGCGTAACTCATCTGTCACTTCTGCAAGTGGAAGCATGACTGGTGCGCCTTCAATCATATTATCCCTTGGTGACAATGTTAGAACTGAGCTTGATAGGCAGAAGCGAGAATTGGATCAGTATATTAAACTTCAGAAGGAACAGTTGTCAAAAGGATTGAGAGACATGAAACAAAAGCACATGGCATCTCTTTTTACTGCCATTGACAAAGGCGTAAGCAGGAAGCTGAGGGAAAAAGATGTGGAGATAGAGAACATGAACCGTAAGAACCGAGAACTAGCGGAGAAAATAAAGCAGGTAGCCATGGAAGCACAGAACTGGCATTGCAGAGCAAAGTACAACGAGTCGGTTGTGAATGCTCTAAGGAACAATCTCCAGCAGGCTATCTCGCAGGGAGTTGAACAAGCTAAAGAAGGGTTTGGGGACAGTGAGGTTGATGATGCTGCGTCAGGCGTTGACCCGAACAACTTGCTGAGCATCCATGGAATGCCTATGAAATCTACCACCGGAAAGAAGCCGCAAGGCTTGGAGGAGCACATGATTTGCAGGTCATGCAAGGCGAAGGAGGTTTCAATGTTGTTAATGCCTTGTAGGCACCTGTGCTTGTGTATGGACTGTGATGCTTATGTCAATGTTTGTCCTGTATGCCAAATGATGAAATCTGCTAGTGTCCAAGTGTATCTTTCTTAA 1029 0.4441 MLGGYKGNPVLPVFLDDAHMQYQTNAANQLQLFGNLPAGCSVDPVNYFGNEPISSMVRPRRQTGEIDDMSKQQRLQVSLNYNFCHDEPDRSASIPNPNPHPVSTGLRLSYDDDERNSSVTSASGSMTGAPSIILSLGDNVRTELDRQKRELDQYIKLQKEQLSKGLRDMKQKHMASLFTAIDKGVSRKLREKDVEIENMNRKNRELAEKIKQVAMEAQNWHCRAKYNESVVNALRNNLQQAISQGVEQAKEGFGDSEVDDAASGVDPNNLLSIHGMPMKSTTGKKPQGLEEHMICRSCKAKEVSMLLMPCRHLCLCMDCDAYVNVCPVCQMMKSASVQVYLS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1025 342 MobiDBLite consensus disorder prediction 86 128 - -
Lele49g1025 342 PIRSF SBP1_RNase_bind 1 342 IPR017066 -
Lele49g1025 342 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 277 341 - -
Lele49g1025 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Lele49g1025 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 67 339 IPR017066 -
Lele49g1025 342 Coils Coil 189 216 - -
Lele49g1025 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
Lele49g1025 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1025 Lele-ChrLele49 6574739 6576718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1025 294 330 Miscellaneous Gene Families AT2G21380 40.541 1.25e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1025 49 6574739 6576718 Lele49g1025 49 6574739 6576718 ECH
Lele49g1025 49 6574739 6576718 Lele51g1044 51 6687886 6689895 hybridization
Lele49g1025 49 6574739 6576718 Lele52g1082 52 7261480 7263685 hybridization