Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1021 ATGCAGGTGAGCGTCCCATGCAGCAGTTTGTCTATGGTGGTTACAGTGAGATGTGGACATTGCACAAGCCTACTCTCTGTCAATACGATGAAAGCTTCTTTTCCAAAAGAGGGAAGTCCAGAAGAAGAAGCACACAAGACTTTGGACAGCAGCCATATCCGTAATGGAGGATCCATGATTATGACCTATTCTGATTGTGAGGAAGAAGATGCAATTCCCATCAGCATTGTGGCAAATAAACGAAAGAGAGAAGAGATCAGAAGGCTAAAGGCTGAAAACCCAGACATGGCTCACAAAGAAGCTTTTAGCACAGCTGCCAAAAATTGGGCTAGCAAAGGAGATGAAGAAAGCTTCAGTCAGACAGAGCAACTTGTGGATCTTGACTCTCATTTGAACCCTCATGAAGATGACGAGGCAAAACCATCATTGCTTTGTAAAATACTGAAACTTGATTAG 456 0.432 MQVSVPCSSLSMVVTVRCGHCTSLLSVNTMKASFPKEGSPEEEAHKTLDSSHIRNGGSMIMTYSDCEEEDAIPISIVANKRKREEIRRLKAENPDMAHKEAFSTAAKNWASKGDEESFSQTEQLVDLDSHLNPHEDDEAKPSLLCKILKLD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1021 151 MobiDBLite consensus disorder prediction 33 54 - -
Lele49g1021 151 MobiDBLite consensus disorder prediction 103 123 - -
Lele49g1021 151 Pfam YABBY protein 2 53 IPR006780 GO:0007275
Lele49g1021 151 Pfam YABBY protein 79 111 IPR006780 GO:0007275
Lele49g1021 151 PANTHER PROTEIN YABBY 6-RELATED 2 111 IPR006780 GO:0007275
Lele49g1021 151 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1021 Lele-ChrLele49 6551481 6555631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1021 1 110 C2C2-YABBY Transcription Factor Family AT1G23420 47.917 3.82e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele49g1021 YABBY 8.2e-13 CL0114